Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272959g00001 ATGGTTTGCACTGCCAATGATTTACAACAATGGAAGGATTTCCCAAAGGGACTCAAGGTTCTTCTCCTTGAAAGAGACGCAGCTTCCGCCGCCGAGATAAAACCAAAGCTTGAAGCCATGGACTATAATGTTTCTGCTTTCTGCGATGAGAACGAAGCCTTATCGGCGATCTCAAGTAGATCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTATAAACAGCGGCCGAGGAGGTTTCAAATTTCTTGAGAATGCGAAGGACTTGCCAACCATTATGACTTCAAATGATCATTGCCTGAGCACCATGATGAAATGCATAGCGCTCGGTGCAGTCGAGTTCCTTCACAAGCCTCTCTCCGAGGACAAGCTTAGAAATATATGGCAGCATGTGGTTCACAAGGCATTCAGTGCTACTACAAGTTCTGTGTCCGAATCGTTAAAGCCGGTCAAAGAATCTGTAGTATCCATGTTGCAGCTCCAAACAGATAATGAAAAACAAGAAGGTACATATACTGATGATGATCATGATCCTGGAAGTGATAAGTATCCGGCTCCATCTACCCCGCAATTGAATCAGGGATCGAGACTAATGGACGATGGCGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAGGACAGTGGGGAACATGATGGAGAAGGGGAATCGAAATCCGTCGAAACTACATGTGGAAATTTGAATACTGAAAGTAATGATAATAATAATAATAATCCTGATGAACCAATGAACACTGAAAAGACTTTGGTCAAGAATGAAGAGGATTTAGTTAAAGATTCTAGGAATGAGAATCATGATAGTTCTGTTTTTACACAAACACATGATAAGGTTCTCAGCAGTGGTGATGGTAACAAAAAGTCTTCAAATAATGTGGATTCGAGCGCGTTGAAAGCTCATCGCAAGAAGATGAAGGTAGATTGGACACCTGACCTTCACAAAAAGTTTGTGAAGGCGGTTGAACAACTAGGCCTCGACCAAGCCATTCCGTCTCGAATATTGGAACTAATGAAAGTGGAGGGATTGACAAGGCATAATGTTGCAAGCCATCTTCAGAAATACCGAATGCATAAAAGGCAAATATTGCCCAAGGAAGAAGGTAGGAAATGGCTAAATCAAAGAGACCAAATGCAAAAGAGCTATTGTCTTCAACGGCCGATAATGCCGTTTCCACCCAATCATTCGAATCACACCCTTTCTCCACCTCCTATATACCCTATGTGGAGGCAACCCGGGGCTCAAACGGCAGCTATGCAGGTTTGGGGCCCTCCTATGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCGCTTCCCGGGTTACAGATGCACGCGGATGCATGGGGCTGCCCGGTTCTGCCGCCTCCTCAGCCTCCTCTTCCTTGCTTTTCCTACCCTCCTCAGAATATTCCCGGCATTCACCATACTAATTCTATGGATTACAACTATATCATGCCACAGAGTTCCCCTGAACTTCATCTGGCCGACGAGGTTGTTGACAAGGTAGTGAAGGAAGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTCAAACCACCTTCCACAGATAGTGTGCTGGCCGAGCTTTCCCGAAAAGGCATATCAACCGTGCCTCCACGTGCCAAGGGCTCCTAA 1653 0.4549 MVCTANDLQQWKDFPKGLKVLLLERDAASAAEIKPKLEAMDYNVSAFCDENEALSAISSRSESFHIAIVEVSINSGRGGFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLHKPLSEDKLRNIWQHVVHKAFSATTSSVSESLKPVKESVVSMLQLQTDNEKQEGTYTDDDHDPGSDKYPAPSTPQLNQGSRLMDDGDCHEQTNCSTEKDSGEHDGEGESKSVETTCGNLNTESNDNNNNNPDEPMNTEKTLVKNEEDLVKDSRNENHDSSVFTQTHDKVLSSGDGNKKSSNNVDSSALKAHRKKMKVDWTPDLHKKFVKAVEQLGLDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEEGRKWLNQRDQMQKSYCLQRPIMPFPPNHSNHTLSPPPIYPMWRQPGAQTAAMQVWGPPMWHPTESWHWKPLPGLQMHADAWGCPVLPPPQPPLPCFSYPPQNIPGIHHTNSMDYNYIMPQSSPELHLADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRKGISTVPPRAKGS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272959g00001 550 MobiDBLite consensus disorder prediction 226 252 - -
Stsc272959g00001 550 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Stsc272959g00001 550 FunFam Two-component response regulator-like APRR2 17 143 - -
Stsc272959g00001 550 MobiDBLite consensus disorder prediction 160 252 - -
Stsc272959g00001 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 306 365 IPR017930 -
Stsc272959g00001 550 MobiDBLite consensus disorder prediction 198 225 - -
Stsc272959g00001 550 SMART REC_2 18 128 IPR001789 GO:0000160
Stsc272959g00001 550 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Stsc272959g00001 550 SUPERFAMILY Homeodomain-like 307 366 IPR009057 -
Stsc272959g00001 550 Gene3D - 18 145 - -
Stsc272959g00001 550 FunFam Two-component response regulator 305 368 - -
Stsc272959g00001 550 Pfam Myb-like DNA-binding domain 312 361 IPR001005 -
Stsc272959g00001 550 Gene3D - 305 367 - -
Stsc272959g00001 550 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 546 IPR044825 GO:0003700|GO:0045893
Stsc272959g00001 550 MobiDBLite consensus disorder prediction 278 301 - -
Stsc272959g00001 550 MobiDBLite consensus disorder prediction 167 181 - -
Stsc272959g00001 550 NCBIfam myb-like DNA-binding domain, SHAQKYF class 309 364 IPR006447 GO:0003677
Stsc272959g00001 550 MobiDBLite consensus disorder prediction 267 303 - -
Stsc272959g00001 550 SUPERFAMILY CheY-like 16 134 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272959g00001 Stsc-Chr272959 11173 15617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272959g00001 1 544 Response Regulator Gene Family AT4G18020 51.318 1.31e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc272959g00001 Response_reg 7.1e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272959g00001 - - gmx:100820385 710.294