Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272951g00004 ATGGATTCTGCGATCTCCGTTACCACACCGGCTCAGATGGCACTCTTCAAGGCGCTCCACCGCCACTTAGCCACCACGGCTCCTCACCGCCTTCCGCTCCTTCGCCGGAGCTTCAAATGCGCAGTCAATTCCTACGCCTCCCGCCACATTCCGACCTCACCCGCCTCTTTCGGTTTCTCGCCGTCGCTCGGTGCCTTCCGCCTGCTGCTTCCGCCTCAGCCGCAGTGCCGTTTACGGTGCGTTTCGAGCTCCGCTGCTTCCTTCGCTTCTGAATCCGGCGGCGGAGGCAGAGGCGGAGCTGGAACTGGCGGCGAAGGAGGAGGAGGAGGCGGAGGCGAGTCTGGAGACGGTAGCGTGAAGTTAGTTGGAGACGCAGCTCAGGAGGTTTCGGCACTTTCGCCTGATGTGATCATTCTCGATGTTTCGGGAATGACGTGTGGTGGATGTGCTGCGACTGTAAAGAGGATTTTGGAAAGTCGTCCCCAAGTGTCATCTGCTAGTGTGAATCTTACTACAGAGACAGCGATTGTTTGGCCTGTATCTGAAGCGAAAAAAGCACCAAATTGGCAGAAGCACTTAGGGGAGGCACTTGCAGAGCATTTGACTAACTGTGGATATAGCTCCAGCCTTCGAGGTGAGTCTCCGTGGATTCTTGTGGGTATTGGAGTTCCATGA 675 0.5659 MDSAISVTTPAQMALFKALHRHLATTAPHRLPLLRRSFKCAVNSYASRHIPTSPASFGFSPSLGAFRLLLPPQPQCRLRCVSSSAASFASESGGGGRGGAGTGGEGGGGGGGESGDGSVKLVGDAAQEVSALSPDVIILDVSGMTCGGCAATVKRILESRPQVSSASVNLTTETAIVWPVSEAKKAPNWQKHLGEALAEHLTNCGYSSSLRGESPWILVGIGVP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272951g00004 224 FunFam Copper-transporting ATPase PAA1, chloroplastic 135 210 - -
Stsc272951g00004 224 ProSitePatterns Heavy-metal-associated domain. 141 170 IPR017969 GO:0046872
Stsc272951g00004 224 Pfam Heavy-metal-associated domain 139 206 IPR006121 GO:0046872
Stsc272951g00004 224 ProSiteProfiles Heavy-metal-associated domain profile. 135 209 IPR006121 GO:0046872
Stsc272951g00004 224 CDD HMA 139 209 IPR006121 GO:0046872
Stsc272951g00004 224 SUPERFAMILY HMA, heavy metal-associated domain 137 209 IPR036163 GO:0046872
Stsc272951g00004 224 MobiDBLite consensus disorder prediction 88 119 - -
Stsc272951g00004 224 Gene3D - 136 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272951g00004 Stsc-Chr272951 17330 20123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272951g00004 120 211 Primary Pumps ATPases AT4G33520 70.652 6.44e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272951g00004 K17686 - ahf:112717811 311.227