Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272951g00003 ATGGAGGAAAAGCGCAAACAATTAAAACAAAGTGGTCGCGAGCTAGCTGTTTCTTGGGCTCTTTGTGCTGTTTGTCTTGTTGGCCATCTTTCTCATTTCTTTGCGGCTAGGGCCCCATGGATCCATGCATTTCACTCTGTTGGGTTTCATGTATCACTGTCTTTGTTTACATTGCTTGGTCCTGGTCGCCAGCTTATCTTTGATGGACTAAAAAGCCTTCTTAAAGGGGCACCAAACATGAATACCTTAGTTGGTCTTGGAGCCATATCATCATTTACAGTCAGTTCATTTGCTACACTGCTACCAAATTTGGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATTGCATTTGTCTTGTTAGGAAGGAATCTTGAGCAGAGAGCAAAAATTAAAGCAACCGGTGATATGACAGGACTTCTTAGTTTACTACCATCAAAAGCACGCCTACTTGTTAATAATGGCAAAACGGAAGTTGACTCAATTGTTGAAGTTCCTTCTAACAGTCTTTCTGTTGGAGACCAAATTATTGTGTTGCCTGGAGATCGTATCCCAGCAGATGGAATTGTCAGAGCTGGTAGAAGCACTGTAGATGAGTCAAGTTTCTCTGGTGAGCCACTTCCAGTAACAAAATTACCCGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAACACTAACAATGGAAGTAAGGAGACCAGGTGGTGAGACTGCTATGGGGGACATTGTACGTCTCGTTGAAGAGGCACAAAGCCGGGAAGCTCCAGTACAGCGAGTGGCTGATAAGGTAGCTGGACACTTCACTTATGGGCTTGCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGATTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGGGCTACAAGAGGTTTACTGTTGCGTGGTGGAAACATTTTAGAGAAGTTTGCCATGGCAGATACAGTTGTATTTGACAAAACAGGGACCCTCACAGTTGGTCGACCTGTTGTGACAAAAGTTATTGCTCCATCATGTTTACAAAATGCAAATTCAAGCCAAACAGAAGACAATACATGGTCTGATGTCGAAGTTTTGAGATTAGCAGCTGCAGTAGAATCAAATTCAGTACATCCAGTCGGGAAAGCAATTGTGGATGCTGCTCAGAAAGTTAATTGTACTAATGCTAAGGTTGCAGATGGAACATTCCTTGAAGAACCTGGTTCTGGTGCAGTAGCAACTGTTGATAACAGAAAGGTCTCTGTTGGGACATTGGATTGGATCACTAGGCATGGGGTTAGCAGCAGTATACACGAAGTGGAGGATTCTAAAAATAAATCTGTTGTCTATGTTGGAGTAAACGATACCCTAGCTGGCCTTATTTATTTTGAAGATGAGATAAGGGAAGATGCAAAACGCGTTGTTGATGCATTGTCTAAGCAAGGTATTGGGGTGTACATGCTGTCTGGAGACAAAAGAAATGCAGCTGAGCATGTTGCATCCCTTGTGGGAATCCCTAAAGAGAAGGTAAAAGGTTGCATACCTTGA 1551 0.432 MEEKRKQLKQSGRELAVSWALCAVCLVGHLSHFFAARAPWIHAFHSVGFHVSLSLFTLLGPGRQLIFDGLKSLLKGAPNMNTLVGLGAISSFTVSSFATLLPNLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATGDMTGLLSLLPSKARLLVNNGKTEVDSIVEVPSNSLSVGDQIIVLPGDRIPADGIVRAGRSTVDESSFSGEPLPVTKLPGSEVAAGSINLNGTLTMEVRRPGGETAMGDIVRLVEEAQSREAPVQRVADKVAGHFTYGLACSVLVIACPCALGLATPTAVLVGTSLGATRGLLLRGGNILEKFAMADTVVFDKTGTLTVGRPVVTKVIAPSCLQNANSSQTEDNTWSDVEVLRLAAAVESNSVHPVGKAIVDAAQKVNCTNAKVADGTFLEEPGSGAVATVDNRKVSVGTLDWITRHGVSSSIHEVEDSKNKSVVYVGVNDTLAGLIYFEDEIREDAKRVVDALSKQGIGVYMLSGDKRNAAEHVASLVGIPKEKVKGCIP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272951g00003 516 FunFam Copper-transporting ATPase 1, putative 131 253 - -
Stsc272951g00003 516 SUPERFAMILY Calcium ATPase, transduction domain A 162 249 IPR008250 -
Stsc272951g00003 516 Gene3D - 131 253 - -
Stsc272951g00003 516 PANTHER ATP7, ISOFORM B 274 511 - -
Stsc272951g00003 516 FunFam Copper-transporting ATPase PAA1 chloroplastic 336 468 - -
Stsc272951g00003 516 Gene3D - 292 515 IPR023214 -
Stsc272951g00003 516 Pfam haloacid dehalogenase-like hydrolase 322 505 - -
Stsc272951g00003 516 PRINTS P-type cation-transporting ATPase superfamily signature 325 339 - -
Stsc272951g00003 516 PRINTS P-type cation-transporting ATPase superfamily signature 482 492 - -
Stsc272951g00003 516 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Stsc272951g00003 516 PRINTS P-type cation-transporting ATPase superfamily signature 460 471 - -
Stsc272951g00003 516 Gene3D - 354 467 IPR023299 GO:0000166
Stsc272951g00003 516 Pfam E1-E2 ATPase 144 271 - -
Stsc272951g00003 516 ProSitePatterns E1-E2 ATPases phosphorylation site. 327 333 IPR018303 -
Stsc272951g00003 516 SUPERFAMILY HAD-like 313 508 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272951g00003 Stsc-Chr272951 11335 16959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272951g00003 62 506 Primary Pumps ATPases AT1G63440 34.269 6.46e-73 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272951g00003 K17686 - gmx:100777857 841.647