Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272948g00005 ATGCTAACAGGTGTAATAGCTGCAGTAATTGCAGGATTGTTGTTGGCTACCTCTTGTTTTATATGCAAGTCATCAAGGTGGCAAGAACAATCTTGCTTGCCAAGGAATGGTAACCGAGATATTGAAACCTTCTTGAGAAATCATGGAGAGTTAATTCTAAAGAGATACAAATTCTCGGATGTGAAGAAAATGACCAACTCTTTCAAAGTGAAACTAGGACAAGGTGGTTTTGGTACTGTATACAAGGGAAACTTACCCAATGGTTCCAATGTGGCCGTCAAAATGTTGAAGCAATCTAAAGGAAATGGCGAAGAAGAATTTATTAACGAGGTAACTAGCATTAGCAGAGCTTCTCATGTAAATGTTGTCAATCTTCTGGGATTTTGTTTAGAAGGTCACAAGAAAGTTCTCATCTATGAGTTTATGTGTAATGGTTCCCTAGACAGGTTTATTGACAAAGAGGAACCTATAACTACTCCACTCTTGAGTTGGGATAATCTGTATCAAATTGCTATAGGGATAGCAAGAGGATTGGAGTATTTGCATAGAGGATGCAACACGCAAATTTTGCATTTTGACATAAAACCGCATAATATTCTTTTGAATGAAAACTTTTGTCCTAAGATATCCGATTTTGGGCTAGCAAAGCTTTGTCCTAGAAAAGAAAGTCACATTTCCATATCCGCAGCTAGAGGAACAATAGGGTACATAGCACCAGAAGTGGGGAATAGATATCTCGGTAGAGTTTCACATAAATCTGATGTTTATAGCTATGGAATGATGCTTATAGAAATGGTAGGGATGAAGGAGAACAGCAAAATTGCAGAGACAAGTCAAACAAGTGAGATGTACTTCCCTGAATGGATATGCAAATGGCTTGAACGGGGCACTGAAGTAGGGCCTAATGATGGAGAGTTATCAATGGAGGAAAATGATGTTGTCAAGAAAATGACAGTGGTGGGTTTATGGTGCATCCAACAGATTCCAAAAGATAGACCTACAATGAGTAAAGTTGTAGAAATGTTGGAAGGAAGCATGGATTCCCTGGAAATGCCACCAAAACCTGTTCTGTCTTCTCCGGCAAGAGTAATGGCAACAGAATCTTCTTCTATTGTATCAGTTGTAGAATCTTCTACTAGTGTAACTTAG 1149 0.3864 MLTGVIAAVIAGLLLATSCFICKSSRWQEQSCLPRNGNRDIETFLRNHGELILKRYKFSDVKKMTNSFKVKLGQGGFGTVYKGNLPNGSNVAVKMLKQSKGNGEEEFINEVTSISRASHVNVVNLLGFCLEGHKKVLIYEFMCNGSLDRFIDKEEPITTPLLSWDNLYQIAIGIARGLEYLHRGCNTQILHFDIKPHNILLNENFCPKISDFGLAKLCPRKESHISISAARGTIGYIAPEVGNRYLGRVSHKSDVYSYGMMLIEMVGMKENSKIAETSQTSEMYFPEWICKWLERGTEVGPNDGELSMEENDVVKKMTVVGLWCIQQIPKDRPTMSKVVEMLEGSMDSLEMPPKPVLSSPARVMATESSSIVSVVESSTSVT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272948g00005 382 Gene3D Transferase(Phosphotransferase) domain 1 142 351 - -
Stsc272948g00005 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Stsc272948g00005 382 FunFam serine/threonine-protein kinase PBS1-like 37 141 - -
Stsc272948g00005 382 SUPERFAMILY Protein kinase-like (PK-like) 50 343 IPR011009 -
Stsc272948g00005 382 Gene3D Phosphorylase Kinase; domain 1 49 141 - -
Stsc272948g00005 382 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Stsc272948g00005 382 SMART serkin_6 66 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272948g00005 382 FunFam PR5-like receptor kinase 142 354 - -
Stsc272948g00005 382 Pfam Protein tyrosine and serine/threonine kinase 68 342 IPR001245 GO:0004672|GO:0006468
Stsc272948g00005 382 ProSiteProfiles Protein kinase domain profile. 66 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272948g00005 382 PANTHER RUST RESISTANCE KINASE LR10-RELATED 38 363 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272948g00005 Stsc-Chr272948 17753 19114 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272948g00005 4 381 Receptor kinase-like Gene Family AT1G66910 51.579 1.91e-128 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc272948g00005 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272948g00005 - - ahf:112751085 555.444