Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272948g00003 ATGTTGCATCAATCCAAAGGAAATGGAGACGAATTTATTAACGAGGTAGCTACCATTAGTAGAACTTCTCATGTTAATGTTGTCACCCTTCTTGGGTTTTGCTTAGAAGGTCACAAAAAGGTTCTCATCTATGAGTTTATGTCTAATGGTTCCCTTGACAATTTTATTTTCAAAAAGGAACCTAGATATACTCCACTCTTGAGTTGTGAAAAATTGTATCAAATTTCCATAGGCATAGCAAGAGGATTGGAGTATTTGCATAGAGGATGCAACATTCGAATTTTTCATTTTGACATAAAACCACATAATATTCTTTTGGATGAAAACTTTTGCCTAAGATATCAGATTTCGGGCTAG 357 0.3445 MLHQSKGNGDEFINEVATISRTSHVNVVTLLGFCLEGHKKVLIYEFMSNGSLDNFIFKKEPRYTPLLSCEKLYQISIGIARGLEYLHRGCNIRIFHFDIKPHNILLDENFCLRYQISG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272948g00003 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272948g00003 118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Stsc272948g00003 118 Pfam Protein tyrosine and serine/threonine kinase 7 111 IPR001245 GO:0004672|GO:0006468
Stsc272948g00003 118 Gene3D Transferase(Phosphotransferase) domain 1 48 115 - -
Stsc272948g00003 118 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Stsc272948g00003 118 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 111 IPR045874 GO:0004672
Stsc272948g00003 118 SUPERFAMILY Protein kinase-like (PK-like) 8 112 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272948g00003 Stsc-Chr272948 10787 11143 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272948g00003 1 110 Receptor kinase-like Gene Family AT1G66910 60.909 1.48e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc272948g00003 PK_Tyr_Ser-Thr 9.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272948g00003 - - ahf:112751085 205.682