Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272941g00002 ATGGCATTTGTTGATGAATCAATTCAGGAGAAATTGCAAAATCAACCACATTCAATAACCCTACTCTCTACCTTATGTTTCATAATCATAACCATTTTGTGTTTTCTTAAGTTCACAAGAAGAAACAAATTCAATAACCTTCCACCATCTCCATGGAAGCTACCATTAATTGGAAACCTTCATCAATTAGGAACACTTCCACACCAATCCTTAAGAGCACTTTCAAATCAATATGGACCTCTTTTTTCCCTTCAGTTAGGGCAAACTCAAGCCATAGTTGTCTCCTCAGCAGAACTTGTTGAAGAAATAGCAAAATCACATGATGTTGCTTTCTCCAATAGAATAAACACTAAAGCTGCAAAGATTTTCTTCTATCAGTGGATGGATGTTGCTTTTGCACCCTATGGAGAAGAGTGGAGAAGCAAAAGGAAGTTGTGTGTTATTGAACTTCTAAACACAACTAGGGTAAGGTCATTTCAGCCAATTAGAGAAGATGAAGCAACAATGATGGTCAACACCATATGTGAAGCTTGTGCAAAAGGGTCCATTGTGAACCTATCTAAGATTATCATTACAACCACAAACAACATAGCTTCAAGGTGCATTTTCGGGAGAAGTTTTGAAACAAGTGATGGTAGTGATGATGATGGTAGGAAAACCATTGGAGAAGTAGTGAGGAAGATGACATCACAATTAACAACTCTTGGGGTTGGAGACTTGTTCCCTTCATTGGATTGGGTTGATGTTCTTACCGGTTTCAACTCAAGATTGAAGGCTACTTATGTTGAATTAGATTCCATTTTGGAAGAGGTTATTGAAGAGCACAAGAGAAAGAAAAGAAACAAGAATATTAATGATGGTTCTTATGATGATGATAAAGATTTTGTTGATATATTTCTTCAACTTCAAGAGAGGGACATGCTTGAGTTTGAGCTCACCGGAGATACCATGAAAGCAATCCTCATGGACATGTTCGTTGGAGGAAGTGACAGTGTTTCAACAGCTACTGAATGGGCTTTTGCCGAGCTCGCAAAAAAGCCAAAGTGTATGAAGAAAGCTCAAGAAGAGGTGAGAAGAATTGTGGATGGAAAATCTAAGATAGAGGAAAATCATATAAACCAAATGAACTACTTGAAGTGTGTAATCAAAGAAACCCTAAGATTACATCCACCAGCTCCACTTTTGACCCGTAGAAGAACATCAACTAATGTGAAAATTAATGGCTACAACATTCCCAAGGAAATAACCGTGTATGTGAATTCATATGCAATTCATAGAGACCCTAAATTATGGGACAATGCTGAAGAGTTTATTCCTGAAAGATTTGAAGGTAATAGTAATAACCAACAATTTGATTATAAGAAGGTAATAGATTTTAAGTTAATTCCATTTGGTTTTGGAAGAAGGGGGTGTCCTGGAGCTTCATTTGGGATTGCATCTGTTGAATATTTAATGGCTAATCTTTTATATTGGTTTGATTGGAAGGTGCCTAATAATAATAGTAGTAATGGAGATGATGATGTAGAAATGGATATGAGTGAGATGAGTGGAATGACAGTCACCAAGAAAGAGCCACTTTATGTTAAGCCAACACTACTTTACTCATTTGTTTCTAAGTCTTGA 1623 0.3666 MAFVDESIQEKLQNQPHSITLLSTLCFIIITILCFLKFTRRNKFNNLPPSPWKLPLIGNLHQLGTLPHQSLRALSNQYGPLFSLQLGQTQAIVVSSAELVEEIAKSHDVAFSNRINTKAAKIFFYQWMDVAFAPYGEEWRSKRKLCVIELLNTTRVRSFQPIREDEATMMVNTICEACAKGSIVNLSKIIITTTNNIASRCIFGRSFETSDGSDDDGRKTIGEVVRKMTSQLTTLGVGDLFPSLDWVDVLTGFNSRLKATYVELDSILEEVIEEHKRKKRNKNINDGSYDDDKDFVDIFLQLQERDMLEFELTGDTMKAILMDMFVGGSDSVSTATEWAFAELAKKPKCMKKAQEEVRRIVDGKSKIEENHINQMNYLKCVIKETLRLHPPAPLLTRRRTSTNVKINGYNIPKEITVYVNSYAIHRDPKLWDNAEEFIPERFEGNSNNQQFDYKKVIDFKLIPFGFGRRGCPGASFGIASVEYLMANLLYWFDWKVPNNNSSNGDDDVEMDMSEMSGMTVTKKEPLYVKPTLLYSFVSKS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272941g00002 540 CDD CYP71-like 77 526 - -
Stsc272941g00002 540 FunFam Cytochrome P450 83B1 34 529 - -
Stsc272941g00002 540 Pfam Cytochrome P450 48 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Stsc272941g00002 540 PANTHER CYTOCHROME P450 71B11-RELATED 32 531 - -
Stsc272941g00002 540 Gene3D Cytochrome P450 36 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 Coils Coil 350 370 - -
Stsc272941g00002 540 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00002 540 SUPERFAMILY Cytochrome P450 48 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272941g00002 Stsc-Chr272941 12791 16083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272941g00002 21 530 Cytochrome P450 AT1G13110 38.491 2.57e-124 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272941g00002 K20617 - qsu:111998457 539.265