Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272941g00001 ATGCATCTCCACCGTACCATATCTTCAAGAGACATCAGAAAGGGTCTTAAAAGTGCACGATTGCAAAAGAATGTCCTTCATGATTGTCTTTCATGCCTTCCACCTCATTCTTCGCTTGTTTTCTTGCTTTTGACAGGTTCAATGCTTTTTCTTCATCAGGACATGTTTGTGGGAGGAAGTGACAGTGTTTCAACAGCTATTGAATGGGCTTTTGCCGAGCTTGCAAAGAACCCAAATTGCATGAAGAAAGCTCAAGAAGAGGAAGTAACCGTGTATGTGAATTCATATGCAATTCATAGAGACCCTAAATTATGGGACAATGCTGAAGAATTTATTCCTGAAAGATTTGAAGGTAATAATAATAACAACCAACAAGTTGATTATTATAAGGTAATAGATTTTCAATTAATCCCATTTGGTTTGGGAAGAAGGGGGTGTCCTGGAGCTTCATTTGGGATTGCATCTGTTGAATATTTGATGGCTAATCTCTTATATTGGTTTGATTGGAAGGTGCCTAATCATAATAGTAGTAATGGTGATGATGATAATGTAGAAATGGATATGAGTGAGATGAGTGGAATGACAGCCACCAAGTAA 597 0.3769 MHLHRTISSRDIRKGLKSARLQKNVLHDCLSCLPPHSSLVFLLLTGSMLFLHQDMFVGGSDSVSTAIEWAFAELAKNPNCMKKAQEEEVTVYVNSYAIHRDPKLWDNAEEFIPERFEGNNNNNQQVDYYKVIDFQLIPFGLGRRGCPGASFGIASVEYLMANLLYWFDWKVPNHNSSNGDDDNVEMDMSEMSGMTATK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272941g00001 198 SUPERFAMILY Cytochrome P450 50 174 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 Gene3D Cytochrome P450 47 89 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 139 148 IPR017972 GO:0005506|GO:0016705
Stsc272941g00001 198 Gene3D Cytochrome P450 90 198 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 PRINTS E-class P450 group I signature 146 169 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 PRINTS E-class P450 group I signature 47 64 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 PRINTS E-class P450 group I signature 67 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 PRINTS E-class P450 group I signature 136 146 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 Pfam Cytochrome P450 89 176 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 Pfam Cytochrome P450 52 87 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 MobiDBLite consensus disorder prediction 177 198 - -
Stsc272941g00001 198 PANTHER CYTOCHROME P450 71B11-RELATED 41 87 - -
Stsc272941g00001 198 PRINTS P450 superfamily signature 137 146 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 PRINTS P450 superfamily signature 58 75 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272941g00001 198 PRINTS P450 superfamily signature 146 157 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272941g00001 Stsc-Chr272941 8879 10608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272941g00001 54 195 Cytochrome P450 AT2G45550 32.161 1.24e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272941g00001 K20617 - adu:107475676 174.866