Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272932g00003 ATGTTTGGATGTCCCGAGACAGAAAGAATAGAGGAGATAGCAAAGAAGGTGAAGATAGAAGCAGAATTATCAAGTTGTTGTGGAAGTAGTGAACAACAAAAAATGGTGGGGATGAGGAAGCAGTTTGGAAGTTCTTGTGGAGCAACAACCTTAAACACAGTGACACCATGTGCTGCTTGCAAGCTTCTAAGAAGGAGGTGTGCTGAGGAATGTCCTTTCTCTCCATACTTCTCACCACATGAGCCTCAAAAGTTTGCTGCTGTTCATAAAGTCTTTGGTGCCAGCAATGTCTCCAAGATGCTCATGGAAGTAGGAGAGGGGCAAAGAGCAGATGCAGCAAACAGTTTGGTATATGAAGCAAACTTGAGATTAAGAGATCCTGTTTATGGATGCATGGGTGCAATTTCAAGCTTGCAGCAACAAATTCAGACATTGCAAGCTGAAGTCAGTGCTGTTAGGTCTGAGATTCTCAAATACAAATATAGAGAAGCTGCCACTGCCACTCTCATTTCCATGAATCACCATCATCCTCATCTTCCACCTAATAATAATAATCAAGCACCAATAATAATCAATAATAATGATAATAATAATAATACTGCAAACTCTTCTTCATCACAACAACAAGGTATTTCTCATCAGCCCCCTCCTCCTCCGCCGCAATCTTGCCACGCGCCTCCGAATAATCCATCATTGCCTTCTCCTTCTATTGTTGTAGTTCCATCATCTTTGTCTTTGTCTTCTTCGGCTTCTTCCTCGGTATACAACAATACTACTACTCCACCTAAAACCACATTGAGTCATGGATCCATTACTAGTGAAAGTGTTCCTTATTTTGTCTAA 843 0.4116 MFGCPETERIEEIAKKVKIEAELSSCCGSSEQQKMVGMRKQFGSSCGATTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVGEGQRADAANSLVYEANLRLRDPVYGCMGAISSLQQQIQTLQAEVSAVRSEILKYKYREAATATLISMNHHHPHLPPNNNNQAPIIINNNDNNNNTANSSSSQQQGISHQPPPPPPQSCHAPPNNPSLPSPSIVVVPSSLSLSSSASSSVYNNTTTPPKTTLSHGSITSESVPYFV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272932g00003 280 MobiDBLite consensus disorder prediction 235 274 - -
Stsc272932g00003 280 MobiDBLite consensus disorder prediction 173 280 - -
Stsc272932g00003 280 Coils Coil 135 155 - -
Stsc272932g00003 280 Pfam Lateral organ boundaries (LOB) domain 56 153 IPR004883 -
Stsc272932g00003 280 MobiDBLite consensus disorder prediction 177 211 - -
Stsc272932g00003 280 MobiDBLite consensus disorder prediction 212 234 - -
Stsc272932g00003 280 ProSiteProfiles LOB domain profile. 55 156 IPR004883 -
Stsc272932g00003 280 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 52 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272932g00003 Stsc-Chr272932 12867 14708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272932g00003 12 173 AS2 family AT2G30340 67.284 7.57e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc272932g00003 LOB 8.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272932g00003 - - adu:107458169 290.041