Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272932g00002 ATGTCCCGAGACAGAATAGAGGAGATAGCAAAGAAGGTGAAGATAGAAGCAGAATTATCAAGTTGTTGTGGAAGTAGTGAACAACAAAAAATGGTGGGGATGAGGAAGCAGTTTGGAAGTTCTTGTGGAGCAACAACCTTAAACACAGTGACACCATGTGCTGCTTGCAAGCTTCTAAGAAGGAGGTGTGCTGAGGAATGTCCTTTCTCTCCATACTTCTCACCACATGAGCCTCAAAAGTTTGCTGCTGTTCATAAAGTCTTTGGTGCCAGCAATGTCTCCAAGATGCTCATGGAAGTAGGAGAGGGGCAAAGAGCAGATGCAGCAAACAGTTTGGTATATGAAGCAAACTTGAGATTAAGAGATCCTGTTTATGGATGCATGGGTGCAATTTCAAGCTTGCAGCAACAAATTCAGACATTGCAAGCTGAAGTCAGTGCTGTTAGGTCTGAGATTCTCAAATACAAATATAGAGAAGCTGCCACTGCCACTCTCATTTCCATGAATCACCATCATCCTCATCTTCCACCTAATAATAATAATCAAGCACCAATAATAATCAATAATAATGATAATAATAATAATACTGCAAACTCTTCTTCATCACAACAACAAGGTATTTCTCATCAGCCCCCTCCTCCTCCGCCGCAATCTTGCCACGCGCCTCCGAATAATCCATCATTGCCTTCTCCTTCTATTGTTGTAGTTCCATCATCTTTGTCTTTGTCTTCTTCGGCTTCTTCCTCGGTATACAACAATACTACTACTCCACCTAAAACCACATTGAGTCATGGATCCATTACTAGTGAAAGTGTTCCTTATTTTGTCTAA 831 0.4128 MSRDRIEEIAKKVKIEAELSSCCGSSEQQKMVGMRKQFGSSCGATTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVGEGQRADAANSLVYEANLRLRDPVYGCMGAISSLQQQIQTLQAEVSAVRSEILKYKYREAATATLISMNHHHPHLPPNNNNQAPIIINNNDNNNNTANSSSSQQQGISHQPPPPPPQSCHAPPNNPSLPSPSIVVVPSSLSLSSSASSSVYNNTTTPPKTTLSHGSITSESVPYFV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272932g00002 276 MobiDBLite consensus disorder prediction 231 270 - -
Stsc272932g00002 276 Coils Coil 131 151 - -
Stsc272932g00002 276 MobiDBLite consensus disorder prediction 169 276 - -
Stsc272932g00002 276 Pfam Lateral organ boundaries (LOB) domain 52 149 IPR004883 -
Stsc272932g00002 276 ProSiteProfiles LOB domain profile. 51 152 IPR004883 -
Stsc272932g00002 276 MobiDBLite consensus disorder prediction 173 207 - -
Stsc272932g00002 276 MobiDBLite consensus disorder prediction 208 230 - -
Stsc272932g00002 276 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272932g00002 Stsc-Chr272932 12867 14708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272932g00002 8 169 AS2 family AT2G30340 67.284 4.86e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc272932g00002 LOB 8.5e-40 No_clan