Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272929g00002 ATGGATCCAAATGGTTCCATTGATGATAAGTGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTCTGCTCAAAATGTTTTCTCCCTTCGGAAAGATTGTTTCTGAGGACTTCTTGTGGCACACTCGTGGTCCGAAACGTGGGGAACCACGGGGTTTCGCCTTTATCCAGTATAGCAAAAATGAGGAAGCGAAATTGGCCATGGAGAAAATGCATGGGAGGTTAGCGTGTGCCCGGCCATTGGTTGTTCGCCTTGCTGGTGAGAAGTACATGTTGGAAACAGCTGACAACTCTACGAAAGCAGCCGGTGAAGGACATAAGTTGCATCTTACCGGCAGTGGCATGGGACAGACAAGCCGAAGCGCAAAAATAGCCGCAATAAAGAACAAATTGAAATCCTTAGAGGAGGGTTCTAGGACCAAGAAGCAGAAGCAAAATGATGATATTTCTTGA 471 0.4522 MDPNGSIDDKCESRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSKNEEAKLAMEKMHGRLACARPLVVRLAGEKYMLETADNSTKAAGEGHKLHLTGSGMGQTSRSAKIAAIKNKLKSLEEGSRTKKQKQNDDIS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272929g00002 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Stsc272929g00002 156 SMART rrm1_1 14 90 IPR000504 GO:0003723
Stsc272929g00002 156 Gene3D - 10 104 IPR012677 -
Stsc272929g00002 156 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 150 - -
Stsc272929g00002 156 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Stsc272929g00002 156 MobiDBLite consensus disorder prediction 135 156 - -
Stsc272929g00002 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 81 IPR000504 GO:0003723
Stsc272929g00002 156 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272929g00002 Stsc-Chr272929 13666 15213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272929g00002 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 2.41e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272929g00002 K24527 - gmx:100806572 259.996