Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272927g00003 ATGGCTTCAACATCTGTGGTGACAAACCCAGCAGGAACAAGCACGGACCGGTCACGTGACTCCAAGAGGAAGAAGAAGAAGAAACAACTGCAGAAAGAATATCTTCAGAGTCATTTCAAATGGAAATCCCAAGCTCAGCAACAAATTTATTCCTCAAAGCTTCACCAGGCCTTAGCGAGAGTCAACCTTGCCTCCGCCTCCACATCCGTCCCCCGCCGCGGAAAGGCCGTCAGAGAAGCCGCCGACAGAGTGCTCGCGGCCACAGCGAAAGGCAGAACACGGTGGAGCCGCGCCATACTGACGAACCGCAGGCTGAAGCTAAAGTTCTCGAAACAACACAAGAGACAGCGGGTGGTCCCGCCTGCTGCGCTCGCCCGTTCCAAGAAGCCACGTGTCAGCGTCTTGTGCCTCAAAGGGAAAAAGAACTTACCGTCTGTGCAGAGGAAACTCAGGTTCTTGGCACGCCTCGTTCCCGGTTGCCGGAAAGAACCCGTTCCGGTCATTCTCGAAGAAGCCATCGATTACATACCGGCGCTTGAGATGCAAGTCAGAGCCATGACTGCTCTTGTCAACCTCCTCGCCGGCGCCGGCTCTGACTCCTCTTCCGTCGCCGGCACTAGCTCCCCGCCGCCAAGCTGA 639 0.5634 MASTSVVTNPAGTSTDRSRDSKRKKKKKQLQKEYLQSHFKWKSQAQQQIYSSKLHQALARVNLASASTSVPRRGKAVREAADRVLAATAKGRTRWSRAILTNRRLKLKFSKQHKRQRVVPPAALARSKKPRVSVLCLKGKKNLPSVQRKLRFLARLVPGCRKEPVPVILEEAIDYIPALEMQVRAMTALVNLLAGAGSDSSSVAGTSSPPPS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272927g00003 212 CDD bHLH_AtIBH1_like 140 190 IPR044549 GO:0006355
Stsc272927g00003 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Stsc272927g00003 212 MobiDBLite consensus disorder prediction 1 15 - -
Stsc272927g00003 212 MobiDBLite consensus disorder prediction 1 31 - -
Stsc272927g00003 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 195 IPR036638 GO:0046983
Stsc272927g00003 212 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 193 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272927g00003 Stsc-Chr272927 13738 15245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272927g00003 38 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 55.615 6.82e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272927g00003 - - gmx:100803765 226.098