Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc272927g00002 | ATGGATCCAGGGAATCCCGCTTCAACGCCGGATCCTGAATCGCCGACCTCTCCCTCCGTCGGTTTCAATACCGACCAGCTTCCACACACCAGCCATGTCTCCGAAGACGACGAGGCTTCCGTGGACCCCGATATCATTCACGATGAGCCTGAAGACGTAAACCCCGAAGAGGACGAAGATGGAGAGGATCTTTACAACGACCAGTACATGGATGATTACCGGAGGTTGGATGACCATGATCAGTTTGAGTCGGCTGGGTTGGATGATTCGGTGGAGGATTCTAGGGATTTTGATCAGGTAATGCAAGATCGAAGGGCTGCGGAGATGGAGCTAGATGCTCGTGATGGTCGCGTTACCAATCGCAAATTCCCTCAGCTTCTCCATGACCAGGATACAGATGATGACAGTTACAGGCCCTCTAAAAGGGCTCGAGCTGATTCCAGGGGGGCCCCTAATCTGAGCGATGATGATCTCGACGGGTTGCAGACTTCACCTGGAAGGTCACAGCCAGGACATTCTAGAGATGATGTTCCGAGGACTGATCAAACTGAGGATGATCAATATGATGATGACTTTGATGAGGAAGGTGGCTATGAGATGTACCGAGTTCAAGGAACACTTAGAGAATGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCTAGAAAATTCAAGGATTTCTTGCTGACGTATGTTAATCCTAAAAATGAACACGGTGACTTTGAATATGTGCGGCTGATAAATGAAATGGTGTTAGCCAATAAGTGCAGTTTGGAGATAGATTACAAGCAATTTATCTATGTTCATCCCAACATTGCCATTTGGTTGGCTGATGCGCCTCAGTCTGTCTTAGAAGTAATGCAAGATGTTGCTAAAAATGTTGTCTTTCAGTTGCATCCAAATTACAGAAATATACAACAAAAGATTTATGTTCGTATAACAAACTTACCAGTTTACGACCAGATTCGGAATATAAGACAAATTCACTTGAATACAATGATTCGAATTGGAGGAGTTGTAACTAGGCGTTCAGGAGTCTTTCCCCAGTTGCAACAGGTGAAATATGACTGTAGTAAATGTGGTGCAACTTTGGGACCTTTTTTCCAGAATTCCTATTCAGAGGTGAAAGTTGGATCCTGTCCTGAGTGTCAATCAAAAGGGCCATTTACTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTCACTCTCCAAGAGAGCCCTGGAATCGTTCCTGCAGGCCGATTACCAAGATACAAGGAAGTTATATTATTGAACGATCTGATTGACTGTGCCCGCCCTGGGGAAGAGATTGAGGTCACAGGTATCTATACTAATAACTTCGATTTGTCCCTAAACACAAAGAATGGCTTTCCTGTGTTTGCCACTGTTGTTGAAGCAAATTATGTCACAAAGAAGCACGACCTGTTCTCTGCTTACAAACTTACTCAGGAAGACAAAGAAGAAATTGAGAATTTGAGCAAAGATCCAAGAATAGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGTCACGAGGACATCAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGAAAGCATAGACTGAGAGGAGATATTAATGTTCTACTTCTTGGTGATCCAGGAACAGCGAAGTCACAATTTCTCAAGTACGTTGAGAAAACTGGGCAACGAGCTGTATACACTACTGGCAAGGGGGCGTCTGCTGTTGGTCTCACTGCCGCAGTTCACAAGGATCCTGTAACAAGGGAGTGGACCTTGGAAGGAGGAGCCCTTGTCCTAGCTGACAAAGGGATCTGCCTTATTGATGAGTTTGACAAGATGAATGACCAAGACAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCGGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCCGCCAATCCTATTGGAGGAAGATATGATTCCTCCAAAACATTTTCTCAAAATGTTGAATTGACTGACCCCATTATTTCCCGTTTTGACATCCTGTGTGTTGTGAAGGATGTGGTCGATCCGGTCACTGATGAAATGCTAGCAAAGTTTGTAGTGGACAGTCACTCTAAGTCACAACCAAAGGGTGGTAATAGAGATGAAAAGTCCGTGACTGAGTCCCAAGATGATTATGCATCTGCCGTGCCTGTTGATCCCGAGATACTTCCACAAGAGTTGCTAAAGAAGTATATTACTTATGCTAAATTAAATGTGTTTNNNNNNNNNNCTGATTTGGATAAACTGACACATGTTTACGCAGAACTGCGGAAAGAATCCTCGCACGGTCAAGGGGTCCCTATTGCTGTAAGGCATATTGAGTCAATGATAAGGATGTCTGAAGCTCATGCGAGGATGCATCTCAGGCAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGAGTCCTACTTGATTCATTCATTTCAACCCAGAAATTTGGAGTGCAGAAAGCTCTTCAAAAGAGCTTTAGAAAATACATGACTTTCAAGAAGGACTACAATGAATTGCTGCTTTACCTTCTCCGTGAGCTTGTCAAGAATGCTTTGCGTTTTGAAGAAATTGTTACGGGATCTACTTCAGGTCTTGAACATATAGATGTCAAAGTAGATGATCTCCAGAATAAGGCTCAAGAGCATGAAATTTATGATCTTAAACCATTCTTCAACAGTAGTCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAGCATGGAGTCATCAGACATCGCCTTGCTAACTAA | 2808 | 0.432 | MDPGNPASTPDPESPTSPSVGFNTDQLPHTSHVSEDDEASVDPDIIHDEPEDVNPEEDEDGEDLYNDQYMDDYRRLDDHDQFESAGLDDSVEDSRDFDQVMQDRRAAEMELDARDGRVTNRKFPQLLHDQDTDDDSYRPSKRARADSRGAPNLSDDDLDGLQTSPGRSQPGHSRDDVPRTDQTEDDQYDDDFDEEGGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGDFEYVRLINEMVLANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMQDVAKNVVFQLHPNYRNIQQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGATLGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKHDLFSAYKLTQEDKEEIENLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHSKSQPKGGNRDEKSVTESQDDYASAVPVDPEILPQELLKKYITYAKLNVFXXXXDLDKLTHVYAELRKESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALRFEEIVTGSTSGLEHIDVKVDDLQNKAQEHEIYDLKPFFNSSHFSRANFVLDEEHGVIRHRLAN | 935 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc272927g00002 | 935 | Gene3D | - | 349 | 399 | - | - | |
| Stsc272927g00002 | 935 | FunFam | DNA helicase | 481 | 852 | - | - | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 542 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 602 | 616 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 654 | 666 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 630 | 643 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 681 | 689 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | Gene3D | - | 322 | 447 | IPR012340 | - | |
| Stsc272927g00002 | 935 | Pfam | MCM OB domain | 321 | 448 | IPR033762 | - | |
| Stsc272927g00002 | 935 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 207 | 875 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | Gene3D | - | 481 | 852 | IPR027417 | - | |
| Stsc272927g00002 | 935 | ProSiteProfiles | MCM family domain profile. | 501 | 707 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | MobiDBLite | consensus disorder prediction | 1 | 195 | - | - | |
| Stsc272927g00002 | 935 | Pfam | Mini-chromosome maintenance protein 2 | 36 | 192 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc272927g00002 | 935 | Pfam | MCM P-loop domain | 489 | 711 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | Pfam | MCM N-terminal domain | 222 | 315 | IPR027925 | - | |
| Stsc272927g00002 | 935 | Gene3D | - | 214 | 318 | - | - | |
| Stsc272927g00002 | 935 | Pfam | MCM AAA-lid domain | 747 | 829 | IPR041562 | - | |
| Stsc272927g00002 | 935 | MobiDBLite | consensus disorder prediction | 67 | 153 | - | - | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 389 | 403 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 331 | 348 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 450 | 461 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 354 | 366 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc272927g00002 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 465 | 476 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Stsc272927g00002 | 935 | ProSitePatterns | MCM family signature. | 610 | 618 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Stsc272927g00002 | 935 | MobiDBLite | consensus disorder prediction | 715 | 729 | - | - | |
| Stsc272927g00002 | 935 | SUPERFAMILY | Nucleic acid-binding proteins | 223 | 470 | IPR012340 | - | |
| Stsc272927g00002 | 935 | CDD | MCM2 | 504 | 828 | - | - | |
| Stsc272927g00002 | 935 | MobiDBLite | consensus disorder prediction | 711 | 732 | - | - | |
| Stsc272927g00002 | 935 | MobiDBLite | consensus disorder prediction | 41 | 66 | - | - | |
| Stsc272927g00002 | 935 | FunFam | DNA helicase | 214 | 318 | - | - | |
| Stsc272927g00002 | 935 | FunFam | DNA helicase | 349 | 399 | - | - | |
| Stsc272927g00002 | 935 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 511 | 832 | IPR027417 | - | |
| Stsc272927g00002 | 935 | SMART | mcm | 318 | 830 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc272927g00002 | 935 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc272927g00002 | Stsc-Chr272927 | 3954 | 9191 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc272927g00002 | 21 | 930 | Core DNA Replication Machinery Family | AT1G44900 | 76.170 | 0.0 | 1370 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc272927g00002 | K02540 | - | gmx:100799441 | 1592.4 |