Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272919g00001 ATGGGTGATCATTTATCAAAGCAAAACCTCTTCTTGATCCTCCTCTTTTTAGCAGCTCATGCTAACGATGCAGCAACTCAGCCCGGCAAACACTGTCTTAACAAATGCGGCAACGTCAGCATTCCTTTCCCGTTTGGGACCACACAGGACTGCTCCCTTGACACCAATTTCCTCGTCAATTGCACCAACAATGTCCCTCACTTACCCTTACCACTAACCGACATAATTAGAGAAAACAATTTCCTTCCTCTCCTAAGCATATCCCTCCACGATGACGAACTCCGCGTTTTGTCCCCGGTAGCTACTGATTGCTATACGGTCGACAACAATAATGAAACCGATCAGACTCTTCTCTCCGGAAACTTCAGCATCTCATTGAGCCGAAACATGTTCATCACCGTTGGTTGTAAAACACTTGGAGTACTTGCGGGTTATGAAAGTTATTCTGATGAAGACAGGCCTTATCCCGTAACATGCTTCTCATACTGCGACGAACTCCAAGATGCCATTAATGGATCCTGCACCGGCACCGGTTGTTGCCGTAATATTATTCCCCGCCCAACACAAGGGTGGTCACCGATGATCGAATTTTGGTTTGAGAATTCTTACTTCAATAACAGCCAAGTGGCTAGCTTCAGCCCTTGCGGTTATGTGTTCTTGGTGGAAGAAGGTGGCTATGAATTTAAGACGACACACTTGAAGAAGCTGGAGAATACTGAGTTTCCGGTCGTTCTGGATTGGAGTGTGGGTGATCAAACTTGTGCTGAAGCTATGAAGGACTCTTCCAGGTTCGCGTGTAAGGCAGAGAACAGCACGTGCCATGATTCAGAAAAGCGTCCTGGTTATGTTTGCAAATGCCCTTCTGGTTTTGAGGGTAACCCTTATCTCCTTCATGGTTGTCTACAAGATGTTGATGAATGCGCGGGAGCCAATGATTGCATCCATGAAGCAAAGTGCGAGAACATACCAGGTGGATACAATTGTTTGTGTCCTCATGGATTTCTCGGAGACGGTAAAAACAATGGAACGCAATGTACTGGTCGCGGATCAAGTTACTGGACAATGAACGCTTTGATTTATTCGTTAACTTTGGGCATCAGCATAGCATTAGTTGTGGCAATCTTTTATGTGCAGTGGAAATTGAACATAAGAAAGCTCATCAAACTTAAACAACAATATTTTCAACAAAATGGCGGTTCATTGTTGCAAGAACATATAGCCAAACACAGAAGCTCAAGCCAAATAGCCAAAGTCTTCACTATAGAAGAGCTAAGGAAGGCAACCAACAACTTTGATGAAGGCAAAATCCTTGGCCAAGGTGGCCAAGGCACAGTCTACAAAGGATTATTATCAGACAACAAAACCGTTGCAATAAAAAAGTCCAAAATTAGTGACCCAAGCCAAATTAAGGACTTCATCAATGAGTTAGTTTTACTTTCACAAATCAACCATAAGAATGTGGTTAAGCTTTTGGGTTGTTGTTTGGAAACAGAAATTCCGTTGCTTGTTTATGAATTTATTCCCAACGGCACCATTTATGAGCATCTTCATGGTCATGGACCATCTCTAAGACTTACATGGAAAACAAGATTGAGAATAGCTGCGGAAACTGCTGGGGCATTAGCTTACTTGCATTCGGATACTTCTATACCCATAATCCACAGAGATGTGAAAACTAGTAATATACTACTTGATCATAATCTCACCGCAAAAGTTTCTGATTTCGGAGCTTCAAGAATTGTTCCTCAAGATAAAACTGAGTTAGCCACTTTGGTGCAAGGAACTTGGGGCTATCTTGACCCAGAATCATTTCTTACAAGCCAGTTAACAGATAAGAGTGATGTTTATAGTTTTGGAGTTGTTCTTGCAGAATTACTTACAGGAAGAAAAGCTCTCTGTTTTGACATGCCGGAGGCTTATAAAAACCTTGCAATGCACTTTGTTTCTTCAATGAAGGAGAATCGTTTGCTTGATGTTGTAGACAAGAAGATAATAATCGAAGCCAAGGTTGAGGAAGTAAATGAATTTGCCAAGATTGCAGAACGATGTTTAAGCTCGAAAGGAGAAGAAAGGCCTACAATGAAAGAAGTGGCCATGGAGCTCGAGGGGCTTAGAGCTGAGGAAAACCAGAGATGGTGGTTGGAGAAAGAGAAATTGAAACTAGAAGAAACTGAAATCCTGGTCAAAGCATCACCTTCTATAAGCAATAATGTTGAAGATGGCATTTGTGGAAGTGGCTTCATTTATGGGTTTGATGTTGAATATTGTATTTTATCATGA 2280 0.4193 MGDHLSKQNLFLILLFLAAHANDAATQPGKHCLNKCGNVSIPFPFGTTQDCSLDTNFLVNCTNNVPHLPLPLTDIIRENNFLPLLSISLHDDELRVLSPVATDCYTVDNNNETDQTLLSGNFSISLSRNMFITVGCKTLGVLAGYESYSDEDRPYPVTCFSYCDELQDAINGSCTGTGCCRNIIPRPTQGWSPMIEFWFENSYFNNSQVASFSPCGYVFLVEEGGYEFKTTHLKKLENTEFPVVLDWSVGDQTCAEAMKDSSRFACKAENSTCHDSEKRPGYVCKCPSGFEGNPYLLHGCLQDVDECAGANDCIHEAKCENIPGGYNCLCPHGFLGDGKNNGTQCTGRGSSYWTMNALIYSLTLGISIALVVAIFYVQWKLNIRKLIKLKQQYFQQNGGSLLQEHIAKHRSSSQIAKVFTIEELRKATNNFDEGKILGQGGQGTVYKGLLSDNKTVAIKKSKISDPSQIKDFINELVLLSQINHKNVVKLLGCCLETEIPLLVYEFIPNGTIYEHLHGHGPSLRLTWKTRLRIAAETAGALAYLHSDTSIPIIHRDVKTSNILLDHNLTAKVSDFGASRIVPQDKTELATLVQGTWGYLDPESFLTSQLTDKSDVYSFGVVLAELLTGRKALCFDMPEAYKNLAMHFVSSMKENRLLDVVDKKIIIEAKVEEVNEFAKIAERCLSSKGEERPTMKEVAMELEGLRAEENQRWWLEKEKLKLEETEILVKASPSISNNVEDGICGSGFIYGFDVEYCILS 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272919g00001 759 SMART egfca_6 303 346 IPR001881 GO:0005509
Stsc272919g00001 759 SMART egfca_6 254 301 IPR001881 GO:0005509
Stsc272919g00001 759 Pfam Calcium-binding EGF domain 303 345 IPR001881 GO:0005509
Stsc272919g00001 759 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 708 IPR045274 GO:0007166
Stsc272919g00001 759 CDD EGF_CA 303 337 - -
Stsc272919g00001 759 SMART egf_5 253 301 IPR000742 -
Stsc272919g00001 759 SMART egf_5 306 346 IPR000742 -
Stsc272919g00001 759 ProSiteProfiles EGF-like domain profile. 303 346 IPR000742 -
Stsc272919g00001 759 ProSitePatterns Calcium-binding EGF-like domain signature. 303 328 IPR018097 GO:0005509
Stsc272919g00001 759 FunFam Wall-associated receptor kinase 2 507 724 - -
Stsc272919g00001 759 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Stsc272919g00001 759 Gene3D Transferase(Phosphotransferase) domain 1 507 727 - -
Stsc272919g00001 759 Gene3D Laminin 252 346 - -
Stsc272919g00001 759 Pfam Wall-associated receptor kinase galacturonan-binding 32 96 IPR025287 GO:0030247
Stsc272919g00001 759 SUPERFAMILY EGF/Laminin 302 340 - -
Stsc272919g00001 759 FunFam Wall-associated receptor kinase 2 401 506 - -
Stsc272919g00001 759 Gene3D Phosphorylase Kinase; domain 1 395 506 - -
Stsc272919g00001 759 FunFam Fibrillin 2 298 342 - -
Stsc272919g00001 759 SUPERFAMILY Protein kinase-like (PK-like) 412 701 IPR011009 -
Stsc272919g00001 759 CDD STKc_IRAK 437 704 - -
Stsc272919g00001 759 SMART serkin_6 431 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272919g00001 759 ProSiteProfiles Protein kinase domain profile. 431 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272919g00001 759 Pfam Protein tyrosine and serine/threonine kinase 434 701 IPR001245 GO:0004672|GO:0006468
Stsc272919g00001 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272919g00001 Stsc-Chr272919 6728 9915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272919g00001 8 722 Receptor kinase-like Gene Family AT1G21230 45.604 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc272919g00001 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272919g00001 - - ahf:112763839 1104.35