Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272918g00006 ATGATATCAAGGAGGAAAAGAAAGCAGGTTGATCACTATGTTGAAAATCTCATAAAAAGTTATAGTTCCTTGAGTCTCAAGCGATATACTTATAAAGAAGTGAAAAAGATGACAAAGTCGTTTAGTGAGAAATTAGGAGAAGGAGGATATGGCATTGTGTATAAAGCAAGCTTAGCTGATGGTCAACAGGTAGCAGTAAAAATACTCAAAGAGTCAAAAGGAACTGTAGAAGAATTTATAGATGAGGTTTTTATCATTAGCAGAACATCTCATGTGAACATTGTTTCACTTTTGGGATTTTGTTATGAGAAAAATAAAAGAGCATTGATCTATGAATTCATGCATAATGACTCTTTACATAAGTTCTCTTACAGAAAAGAGTCTGCCAATAATCTTTGTAATTTGGATTGGAACACCTTGTATCAAATCTCAATTGGAATTGCTCGAGGTTTAGAATATCTACATCGAGGATGTAATACAAGAATTTTGCATCTTGATATTAAACCTCAAAATATTCTTTTGGACGATCAACTTCGTCCTAAAATTGCAGATTTCGGATTGGCGAAAATATGTAAGAAGGATCAAAGTATTGTATCTATATTAGGTACAAGAGGAACTCCAGGATACATTGCACCGGAGGTTTTCAGTCGAACTTATGGCGGAGTTTCTCACAAATCTGATGTATATAGCTATGGCATGTTGATTCTTGAAATTATTGGAGGAAGACAGAATTATCATGAGAATGGAGGATCACACACCAGTGAAAATTTTCCAGATTGGATCTACAATGATCTTGAGCAAGGAAATGTTCCTACAAGGTGCTTGCCCCTCACAGAAAAAGAAAATGACATGGTAATGAAAATGACTTTAGTGAGCTTATGGTGTATTCAACCCAATCCATTGGATAGACCTTCTATCAGTAAAGTAATAGAGATGTTGGAAGGACCACTAGAGTCAATACCATATCCTCCAAAACCTGTCTTATTTTCTCCTGAAAGACTTATCTCACAATATTCAGATGTATCTTACAGCATTGAGCATGAGACAAGTTCAACAACAATTGAGGACTTAGAAAAAAGGTTCTAA 1086 0.349 MISRRKRKQVDHYVENLIKSYSSLSLKRYTYKEVKKMTKSFSEKLGEGGYGIVYKASLADGQQVAVKILKESKGTVEEFIDEVFIISRTSHVNIVSLLGFCYEKNKRALIYEFMHNDSLHKFSYRKESANNLCNLDWNTLYQISIGIARGLEYLHRGCNTRILHLDIKPQNILLDDQLRPKIADFGLAKICKKDQSIVSILGTRGTPGYIAPEVFSRTYGGVSHKSDVYSYGMLILEIIGGRQNYHENGGSHTSENFPDWIYNDLEQGNVPTRCLPLTEKENDMVMKMTLVSLWCIQPNPLDRPSISKVIEMLEGPLESIPYPPKPVLFSPERLISQYSDVSYSIEHETSSTTIEDLEKRF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272918g00006 361 ProSitePatterns Protein kinases ATP-binding region signature. 45 67 IPR017441 GO:0005524
Stsc272918g00006 361 FunFam S-receptor-like serine/threonine-protein kinase 6 113 - -
Stsc272918g00006 361 Gene3D Phosphorylase Kinase; domain 1 13 113 - -
Stsc272918g00006 361 SMART serkin_6 39 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272918g00006 361 FunFam PR5-like receptor kinase 114 323 - -
Stsc272918g00006 361 ProSiteProfiles Protein kinase domain profile. 39 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272918g00006 361 Gene3D Transferase(Phosphotransferase) domain 1 114 320 - -
Stsc272918g00006 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Stsc272918g00006 361 SUPERFAMILY Protein kinase-like (PK-like) 15 313 IPR011009 -
Stsc272918g00006 361 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 335 IPR045874 GO:0004672
Stsc272918g00006 361 Pfam Protein kinase domain 42 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272918g00006 Stsc-Chr272918 18214 20256 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272918g00006 26 335 Receptor kinase-like Gene Family AT5G38280 59.365 5.59e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc272918g00006 Pkinase 8.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272918g00006 - - aip:107635702 495.738