Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272918g00005 ATGAGTCAACCAAGATTGAAATCCAAAACTCAAAGCAGTGACACCACAGCATCATTCTTCTTCTTTTTCTTGTTCTTGTGGCAGTGCGTGCTGTCAAATAATAACCACCATAACCAGCTTGAGGGTGAAGAAGCTGCTTATCTCTTGAAGCTTAGAGACGCCATATCCCCTGCTCCCCCTCACTGGTTCAACGTGACTAACATGTGTGAGTGGACCCCGCATGTTACTTGCAACCCAGTTGGAGAAATCCGCAACGTAACTGAAATCAACCTGGTTGGAATGTCTCTTAAGGGACAAGTCCCTCCAGGTCTCAACAACTCTTTTCCATCCCTCACAATCCTCAATCTCTATAACAACTCTCTCACTGGCCCTCTTCCCTCCCTCGCTGGCCTCCGTAACCTCGAAAAGGTGTACCTCAACAGAAACAACTTCACCTCCGTCCCTCATTATGATTCCTTCCAGGGTCTAGTACGTTTGCAGTTTTTATTCTTAGGTCCCAACACTAACCTCGCACCCTGGTCATTTCCTTCCACTTTATCTGCCTCCTCTGACCTCAAGGTTCTCACTCTCACCGCTTCAAACCTCATGGGCTCCTTGCCAGATACATTTGCTTCCTTCCCTGACTTGCGTGTTCTAAAAGTCTCTGGAAACAACCTCACCGGCGGCTTGTTGCCCAACTCTATTAGACGGTTACTCAAGCTACAACAGCTGGATCTCAGTGACCAGAACCACCGTGATGGTGGGTTCTCGGGTACAATTGAATTTCTATCATTAATGACTCAATTGAATTATGTGAATCTCGAGAGGAACTCATTCCAGGGTCCCATTCCTGACTTATCAAGTTGCACCAACTTGACACAACTGTTTCTTCAGGACAACAAATTGACTGGTGAAGTTCCACCCTCTCTCATGAATCTCTCCAAACTGAAGTCCGTTTCATTGGATAGAAACTTGTTGCAGGGTCCTATGCCTGCGTTCAACGTGAATGTGAGTGCTACTCTTGAAGGAAATGGGTTCTGTCTAAACCAACCTGGCCTCCATTGTGATCACAGAGTCACCACCTTGCTACAGGTTGCTGCTGCATTTGGGTATCCGTTTCAGTTGGCACGCACGTGGCGAGGGAACAATCCCTGTACCGGTTGGAATTTCATCACGTGCGATGTACAGGGCAAGATCAGAACCGTTAACTTGACAAAGCTGAATCTCACCGGAACCATCTCACCGGCGTTTGCCAGTTTAACGGATTTGCAAGAACTGTATCTCAGTTGGAATAATTTAAGCGGATCACTGCCTGGAATTTTGACCAGTTTGTCACAACTCAAGATTCTTGATGTCTCCAATAACAATTTATCAGGGATCATTCCTCGATTCTCGTCCAACATCGCACTAAATGTTTCACATAATGGTTTCAGGATCAGTCATTCTCCATCTAGAACCACACTTCTTCTGATTAAATTAGGTGCTGGTGTTGTAGGGAGTATTGTTGGAGTTATAGTAATCTTTGAAGTAATTGTTTTTAATCGAGTGAGGCGTCTTAGTTTATTACACAAGATAATCTTGAGGAGAAAAAGAAAGCAGCCTGATCATTATGTTGAAAATCTCATTAAAAGTTACGATTCTTTGACTCTTAAGCGATATTCATATAAAGAAGTGAAAGAAATGACAAACTCATTTCATAAAAAACTAGGAGAAGGAGGATATGGCATTGTGTATAAAGCAAATTTAGCTGATGGTCAACAGGTAGCAGTAAAAATATTGAAGGAGTCAAAGGGAAGTGTGGAAGAATTTATAGATGAGGTTTTTATCATTAGTAGAACGTCCCATGTGAGCATTGTTTCACTTTTGGGATTTTGTTACGAGAAGAATAAGCGAGCATTGGTCTATGAGTTTATGCATAATGACTCTTTAGAGAAGTTTATCTGCAGAAAAGAGTCCTCCAATATTGTTTGTAGTTTAGATTGGAACACTCTGTATCAAATCTCAATTGGAGTTGCTCGAGGACTAGAGTATCTGCACCATGGATGTAATACAAGAATTTTGCATCTTGATATTAAACCACAGAATATTCTTTTGGATGAAAATTTTTGTCCAAAGGTCGCAGATTTTGGATTGGCTAAAATATGTAAGAAGGATCAAAGTATTGTATCTATACTTGGTACAAGAGGAACTCCAGGATACATTGCACCAGAAGTATTTAGTCGATCTTATGGTAGAGTTTCTCACAAATCTGATGTATATAGTTACGGTATGTTGATCCTTGAAATGATTGGAGGAAGGCATAACTATGAAATTGGAGAATCAAACAACAGCAGTGAAATTTGCTTTCCAGATTTGATCTATAATGATCTTGAACAAGGCAATATTCCTGGAAGGTTTTTTCTCCTCCAAGAAGAAGAAAAGGATATGGTAATGAAAATGATTCTAGTGAGCTTATGGTGTATTCAACCAAATCCATTAGATAGGCCTTCTATTAATAAAGTAATAGAGATGTTAGAAGGACCTATTGAGTCACTGCCATATCCTCCAAAGCCAAATTTGTTTTCTCCGGACAGAGGACTTATCTCAAAATATTCAAATATATCTTCTAGCAATGAACTTGAGATAAGTTTAACAACCATAGAAGAAATTGACTCAGAGAAAATGTAA 2646 0.4067 MSQPRLKSKTQSSDTTASFFFFFLFLWQCVLSNNNHHNQLEGEEAAYLLKLRDAISPAPPHWFNVTNMCEWTPHVTCNPVGEIRNVTEINLVGMSLKGQVPPGLNNSFPSLTILNLYNNSLTGPLPSLAGLRNLEKVYLNRNNFTSVPHYDSFQGLVRLQFLFLGPNTNLAPWSFPSTLSASSDLKVLTLTASNLMGSLPDTFASFPDLRVLKVSGNNLTGGLLPNSIRRLLKLQQLDLSDQNHRDGGFSGTIEFLSLMTQLNYVNLERNSFQGPIPDLSSCTNLTQLFLQDNKLTGEVPPSLMNLSKLKSVSLDRNLLQGPMPAFNVNVSATLEGNGFCLNQPGLHCDHRVTTLLQVAAAFGYPFQLARTWRGNNPCTGWNFITCDVQGKIRTVNLTKLNLTGTISPAFASLTDLQELYLSWNNLSGSLPGILTSLSQLKILDVSNNNLSGIIPRFSSNIALNVSHNGFRISHSPSRTTLLLIKLGAGVVGSIVGVIVIFEVIVFNRVRRLSLLHKIILRRKRKQPDHYVENLIKSYDSLTLKRYSYKEVKEMTNSFHKKLGEGGYGIVYKANLADGQQVAVKILKESKGSVEEFIDEVFIISRTSHVSIVSLLGFCYEKNKRALVYEFMHNDSLEKFICRKESSNIVCSLDWNTLYQISIGVARGLEYLHHGCNTRILHLDIKPQNILLDENFCPKVADFGLAKICKKDQSIVSILGTRGTPGYIAPEVFSRSYGRVSHKSDVYSYGMLILEMIGGRHNYEIGESNNSSEICFPDLIYNDLEQGNIPGRFFLLQEEEKDMVMKMILVSLWCIQPNPLDRPSINKVIEMLEGPIESLPYPPKPNLFSPDRGLISKYSNISSSNELEISLTTIEEIDSEKM 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272918g00005 881 SMART serkin_6 556 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272918g00005 881 PANTHER OSJNBA0070M12.3 PROTEIN 26 837 - -
Stsc272918g00005 881 FunFam Leucine-rich repeat receptor-like kinase 350 474 - -
Stsc272918g00005 881 SUPERFAMILY L domain-like 351 471 - -
Stsc272918g00005 881 Pfam Protein kinase domain 559 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272918g00005 881 SMART LRR_typ_2 413 436 IPR003591 -
Stsc272918g00005 881 SMART LRR_typ_2 131 155 IPR003591 -
Stsc272918g00005 881 SMART LRR_typ_2 437 460 IPR003591 -
Stsc272918g00005 881 SUPERFAMILY Protein kinase-like (PK-like) 534 831 IPR011009 -
Stsc272918g00005 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Stsc272918g00005 881 Gene3D Ribonuclease Inhibitor 41 345 IPR032675 -
Stsc272918g00005 881 FunFam S-receptor-like serine/threonine-protein kinase 524 630 - -
Stsc272918g00005 881 Pfam Leucine rich repeat 185 243 IPR001611 GO:0005515
Stsc272918g00005 881 Gene3D Phosphorylase Kinase; domain 1 531 630 - -
Stsc272918g00005 881 SUPERFAMILY L domain-like 51 327 - -
Stsc272918g00005 881 ProSiteProfiles Protein kinase domain profile. 556 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272918g00005 881 ProSitePatterns Protein kinases ATP-binding region signature. 562 584 IPR017441 GO:0005524
Stsc272918g00005 881 Pfam Leucine Rich Repeat 439 459 IPR001611 GO:0005515
Stsc272918g00005 881 Gene3D Ribonuclease Inhibitor 349 474 IPR032675 -
Stsc272918g00005 881 FunFam PR5-like receptor kinase 631 841 - -
Stsc272918g00005 881 Gene3D Transferase(Phosphotransferase) domain 1 631 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272918g00005 Stsc-Chr272918 13085 16099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272918g00005 484 846 Receptor kinase-like Gene Family AT5G38260 54.645 6.22e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc272918g00005 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272918g00005 - K00924 aip:107635702 767.689