Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272906g00002 ATGGATGATAACTTATTATCAGATATCTTCCAAGACAAAGACTTTGGCGGAGACGATCTCTTTGCCATCTTGGAAAGCCTCGAAGACTTCCCCACTCCAACAAACAACACTGCAGATTTTCCCACCCTTCGTTCCCACAACAACTCATCAACATCTGACCCTGAATCATCATCATTGCCCTCGCCGCAACCCAAAAGACAAAAGCTACTCGTTCCGCCACCGCCTTCCCCTAGCGCCGCCGAAGATGGACAACACCGGATGTCTCACATCACGGTGGAGCGCAACCGGAGAAAGCAGATGAACGAGCACTTATCCGTCCTTAGATCCCTCATGCCTTGCTTCTACGTCAAACGAGGTGATCAAGCATCAATAATTGGAGGAGTGGTTGATTACATCAACGAGTTGCAACAAGTTCTTCAAGCACTTGAAGCAAAGAAGCAAAGAAAAGTTTACACGGATCATGTTCTAAGCCCTAGGCTCGTCTCAAGCCCAAGGACTTCACTACCACTAAGCCCACGGAAACCACCCTTGAGCCCTAGGCTAAGCCTGCCCATAAGCCCAAGGACTCCGCAACCGGGCAGCCCATACAGGCCGCCCGCGGTGCCCTGCAGGTTACAGCCCCCCGCCGCCGCCTTTTCGGCGGCGTCCATATCCAACTCTGTAGAGCCATCTCCAACCACTTCTTCCGCTTCCTCCATTGTTGATGATATCAACAACGAGCTTGTTGCGAATTCAAAATCTGCCATGGCGGAGGTTGAGGTGAAGTTCTCGGGTCCTCACCTTCTTCTCAAAACGGTGTCGCAGCGAATCCCCGGGCAAGCATTGAAGATCATATCAGCTCTTGAAGATCTTGCGCTTGAAATTCTTCAAGTTAATATCAGTACCGCTGATGAAACCATGCTTAATTCATTCACTATCAAG 921 0.5016 MDDNLLSDIFQDKDFGGDDLFAILESLEDFPTPTNNTADFPTLRSHNNSSTSDPESSSLPSPQPKRQKLLVPPPPSPSAAEDGQHRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYTDHVLSPRLVSSPRTSLPLSPRKPPLSPRLSLPISPRTPQPGSPYRPPAVPCRLQPPAAAFSAASISNSVEPSPTTSSASSIVDDINNELVANSKSAMAEVEVKFSGPHLLLKTVSQRIPGQALKIISALEDLALEILQVNISTADETMLNSFTIK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272906g00002 307 MobiDBLite consensus disorder prediction 30 64 - -
Stsc272906g00002 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 160 IPR036638 GO:0046983
Stsc272906g00002 307 Gene3D - 77 162 IPR036638 GO:0046983
Stsc272906g00002 307 CDD bHLH_AtFAMA_like 87 153 - -
Stsc272906g00002 307 FunFam Transcription factor SPEECHLESS 76 150 - -
Stsc272906g00002 307 SMART finulus 90 141 IPR011598 GO:0046983
Stsc272906g00002 307 Pfam Helix-loop-helix DNA-binding domain 86 136 IPR011598 GO:0046983
Stsc272906g00002 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983
Stsc272906g00002 307 MobiDBLite consensus disorder prediction 169 198 - -
Stsc272906g00002 307 PANTHER TRANSCRIPTION FACTOR FAMA 7 307 IPR044283 GO:0003700|GO:0010052
Stsc272906g00002 307 MobiDBLite consensus disorder prediction 161 198 - -
Stsc272906g00002 307 Coils Coil 128 152 - -
Stsc272906g00002 307 MobiDBLite consensus disorder prediction 30 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272906g00002 Stsc-Chr272906 19744 20748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272906g00002 10 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.819 8.37e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272906g00002 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272906g00002 K20558 - gmx:100808130 317.775