Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272884g00001 ATGGGTGGTGGTGGCTCTGATGAAAACAATTCTAGAATTCTTCAAGGAGGGATGGAAAATCATCCGAGGCAGAATGGTTGTGGAAGAAAGTTTGGACAGAACAGAAGAGCATTGAGTGAGATCAATCAGAATCTTGTGCATAATCGATCTTACCCTTGTGTTGTTAACAAGAGAGCTTTGCCTGGGATCCAAGAAATGTCTGAGAAGAAGCAGGCGGATCCGGTGCATCGTCCTATCACAAGGAGGTTTGCTGCTCAAATTGCTTCACAGCAACAGCAGCAGCAATCTTGTGCTGAGGATCCTATCAAGCCGAACCCCTCGATCAAATTCGGGGACTCAATTCTTGTTGATGATGATGAACAAAAGTTCACAGCAGATCAACCAGTGCCTATGTCCTTGGAGAAACCGAAATTGGTGCAGGGGGAGGAAATTGAGATGGAGGATATAGTTGAAGAAGAGTCTGTTATCAACATCGATAGCAGCGATGCGGATGATCATCTCGCGGTGGTGGAATACATCGAAGATCTTCATGAACACTACCGAAAACTCGAGATTTTGAACTGCATCTCGCCAGATTATATGGCGCAACAATTTGACATTAATGAAAGAATGAGGTCTATACTAGTTGACTGGCTAATTGAGGTTCATGACAAATTCAACCTCATGCAAGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCCAAGCAATCAGTTGTAAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTGCCATGCTCTTGGCTTGCAAGTATGAGGAAGTTTCCGTGCCCGTGGTTGGCGACTTAATCCTTATTTCGGATAAAGCTTACACAAGGAAGGATGTTCTGGACATGGTAATTATCTTTAGCATTTTCGAAATAGCATCATTTTCGCGTTTTCGGCTGAGATTTTCTGTTCAAACATTGCAGGAGAAGTTGATGCTCACCACATTGCAGTTTAACATTTCTGTGCCAACTGCATATGTTTTTATGAGAAGATTCCTGAAGGCGGCTCAAGCCGACAAAAAGCTTGAGCTGCTTGCTTTCTTCTTGATGGAGCTATCTCTTGTGGAGTATGACATGCTGAAGTTCCCGGCATCTTTGCTAGCTGCGGCCGCTGTCTACACGGCTCAATGCACTGTCACCGGCTTCAAACAATGGAACAAGACTTGTGAATGGCACACAAACTACTCAGAAAATCAGATATTCGAGTGCTCTCAGATGATGGTGGGGCTACACCAGAATGCCGCGACGGCGAAACTCACTGGTGTGCACAGGAAATACAGTTCATCTAGCTATTGCTTTGCTGCGAAATGCGAACCGGCATGTTTTCTTCTGGAGAACCAATTTTAG 1362 0.442 MGGGGSDENNSRILQGGMENHPRQNGCGRKFGQNRRALSEINQNLVHNRSYPCVVNKRALPGIQEMSEKKQADPVHRPITRRFAAQIASQQQQQQSCAEDPIKPNPSIKFGDSILVDDDEQKFTADQPVPMSLEKPKLVQGEEIEMEDIVEEESVINIDSSDADDHLAVVEYIEDLHEHYRKLEILNCISPDYMAQQFDINERMRSILVDWLIEVHDKFNLMQETLFLTINLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKDVLDMVIIFSIFEIASFSRFRLRFSVQTLQEKLMLTTLQFNISVPTAYVFMRRFLKAAQADKKLELLAFFLMELSLVEYDMLKFPASLLAAAAVYTAQCTVTGFKQWNKTCEWHTNYSENQIFECSQMMVGLHQNAATAKLTGVHRKYSSSSYCFAAKCEPACFLLENQF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272884g00001 453 PIRSF Cyclin_A_B_D_E 309 453 IPR046965 GO:0016538|GO:0044772
Stsc272884g00001 453 PIRSF Cyclin_A_B_D_E 6 291 IPR046965 GO:0016538|GO:0044772
Stsc272884g00001 453 MobiDBLite consensus disorder prediction 1 27 - -
Stsc272884g00001 453 Gene3D - 314 449 - -
Stsc272884g00001 453 CDD CYCLIN_AtCycB-like_rpt1 152 323 - -
Stsc272884g00001 453 FunFam G2/mitotic-specific cyclin 189 300 - -
Stsc272884g00001 453 SUPERFAMILY Cyclin-like 327 444 IPR036915 -
Stsc272884g00001 453 SMART Cyclin_C_2 328 445 IPR004367 -
Stsc272884g00001 453 SMART cyclin_7 332 414 IPR013763 -
Stsc272884g00001 453 SMART cyclin_7 210 294 IPR013763 -
Stsc272884g00001 453 FunFam G2/mitotic-specific cyclin-1 317 440 - -
Stsc272884g00001 453 Pfam Cyclin, C-terminal domain 328 443 IPR004367 -
Stsc272884g00001 453 PANTHER CYCLINS 122 433 IPR039361 -
Stsc272884g00001 453 CDD CYCLIN_AtCycB-like_rpt2 328 444 - -
Stsc272884g00001 453 Gene3D - 175 188 - -
Stsc272884g00001 453 ProSitePatterns Cyclins signature. 205 236 IPR006671 -
Stsc272884g00001 453 Pfam Cyclin, N-terminal domain 177 288 IPR006671 -
Stsc272884g00001 453 Gene3D - 189 289 - -
Stsc272884g00001 453 SUPERFAMILY Cyclin-like 164 289 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272884g00001 Stsc-Chr272884 3216 6281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272884g00001 32 449 Core Cell Cycle Gene Families AT1G20610 53.630 3.85e-153 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272884g00001 K21777 - gmx:100779889 522.702