LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272884g00001	ATGGGTGGTGGTGGCTCTGATGAAAACAATTCTAGAATTCTTCAAGGAGGGATGGAAAATCATCCGAGGCAGAATGGTTGTGGAAGAAAGTTTGGACAGAACAGAAGAGCATTGAGTGAGATCAATCAGAATCTTGTGCATAATCGATCTTACCCTTGTGTTGTTAACAAGAGAGCTTTGCCTGGGATCCAAGAAATGTCTGAGAAGAAGCAGGCGGATCCGGTGCATCGTCCTATCACAAGGAGGTTTGCTGCTCAAATTGCTTCACAGCAACAGCAGCAGCAATCTTGTGCTGAGGATCCTATCAAGCCGAACCCCTCGATCAAATTCGGGGACTCAATTCTTGTTGATGATGATGAACAAAAGTTCACAGCAGATCAACCAGTGCCTATGTCCTTGGAGAAACCGAAATTGGTGCAGGGGGAGGAAATTGAGATGGAGGATATAGTTGAAGAAGAGTCTGTTATCAACATCGATAGCAGCGATGCGGATGATCATCTCGCGGTGGTGGAATACATCGAAGATCTTCATGAACACTACCGAAAACTCGAGATTTTGAACTGCATCTCGCCAGATTATATGGCGCAACAATTTGACATTAATGAAAGAATGAGGTCTATACTAGTTGACTGGCTAATTGAGGTTCATGACAAATTCAACCTCATGCAAGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCCAAGCAATCAGTTGTAAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTGCCATGCTCTTGGCTTGCAAGTATGAGGAAGTTTCCGTGCCCGTGGTTGGCGACTTAATCCTTATTTCGGATAAAGCTTACACAAGGAAGGATGTTCTGGACATGGTAATTATCTTTAGCATTTTCGAAATAGCATCATTTTCGCGTTTTCGGCTGAGATTTTCTGTTCAAACATTGCAGGAGAAGTTGATGCTCACCACATTGCAGTTTAACATTTCTGTGCCAACTGCATATGTTTTTATGAGAAGATTCCTGAAGGCGGCTCAAGCCGACAAAAAGCTTGAGCTGCTTGCTTTCTTCTTGATGGAGCTATCTCTTGTGGAGTATGACATGCTGAAGTTCCCGGCATCTTTGCTAGCTGCGGCCGCTGTCTACACGGCTCAATGCACTGTCACCGGCTTCAAACAATGGAACAAGACTTGTGAATGGCACACAAACTACTCAGAAAATCAGATATTCGAGTGCTCTCAGATGATGGTGGGGCTACACCAGAATGCCGCGACGGCGAAACTCACTGGTGTGCACAGGAAATACAGTTCATCTAGCTATTGCTTTGCTGCGAAATGCGAACCGGCATGTTTTCTTCTGGAGAACCAATTTTAG	1362	0.442	MGGGGSDENNSRILQGGMENHPRQNGCGRKFGQNRRALSEINQNLVHNRSYPCVVNKRALPGIQEMSEKKQADPVHRPITRRFAAQIASQQQQQQSCAEDPIKPNPSIKFGDSILVDDDEQKFTADQPVPMSLEKPKLVQGEEIEMEDIVEEESVINIDSSDADDHLAVVEYIEDLHEHYRKLEILNCISPDYMAQQFDINERMRSILVDWLIEVHDKFNLMQETLFLTINLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKDVLDMVIIFSIFEIASFSRFRLRFSVQTLQEKLMLTTLQFNISVPTAYVFMRRFLKAAQADKKLELLAFFLMELSLVEYDMLKFPASLLAAAAVYTAQCTVTGFKQWNKTCEWHTNYSENQIFECSQMMVGLHQNAATAKLTGVHRKYSSSSYCFAAKCEPACFLLENQF	453

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272884g00001	453	PIRSF	Cyclin_A_B_D_E	309	453	IPR046965	GO:0016538\|GO:0044772
	Stsc272884g00001	453	PIRSF	Cyclin_A_B_D_E	6	291	IPR046965	GO:0016538\|GO:0044772
	Stsc272884g00001	453	MobiDBLite	consensus disorder prediction	1	27	-	-
	Stsc272884g00001	453	Gene3D	-	314	449	-	-
	Stsc272884g00001	453	CDD	CYCLIN_AtCycB-like_rpt1	152	323	-	-
	Stsc272884g00001	453	FunFam	G2/mitotic-specific cyclin	189	300	-	-
	Stsc272884g00001	453	SUPERFAMILY	Cyclin-like	327	444	IPR036915	-
	Stsc272884g00001	453	SMART	Cyclin_C_2	328	445	IPR004367	-
	Stsc272884g00001	453	SMART	cyclin_7	332	414	IPR013763	-
	Stsc272884g00001	453	SMART	cyclin_7	210	294	IPR013763	-

Showing 1 to 10 of 19 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272884g00001	Stsc-Chr272884	3216	6281	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272884g00001	32	449	Core Cell Cycle Gene Families	AT1G20610	53.630	3.85e-153	440

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272884g00001	K21777		-	gmx:100779889	522.702

Showing 1 to 1 of 1 entries