Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272875g00004 ATGGGATTTTCTCCTTCTGTTCTTCAACAACTTGTTACTTCTTTTGCAGTTGTTGCCACATTGTTAAGCATTGCTGTTGGCACAGCACATGAGGGTCCTATCAATTCCTTAACATATTCTGGAAGCCTTAGATTTATCCATTCCCACATAAAAGAGCAAGGTAATAAAATTAATAATAACTCTCCTATTGCTTCAGTCCTGCAAGATCAAGGCAACGATTCTTCATCATCAGATAGTAGAAGTAGTAGTCACAATAACACTCCCACTTTGTTGGTAATCCTCAATGTGGTTCTCCTTCTTGCTATCATACTTCTCTTGATGCTATACTACAACACATCAAGAAAACTAAACAAGATGATGAAGGTACAGGCTCACAACAATAATAACAACAAATCCGTTGTTCTCAAAGAGGTGGACAAAGACGAGGTTGAAAGTAGTATAGTTTCGGAGAAGAAGATAGAGATAGGAGAAGGTACAAAGATGACAGTGGAGGACAGAAAAGAACTGATGTTCTTCAACGGCAATAACAAGACAAGGTTTCAGATGGGACAGCTTCTAAGGGCTTCAGCAGAGACACTGGGACAGGGAACCATGGGGAACAGTTACAAGGCCATGATGCATGATGGACCTACCATTGTTGTGAAGAGACTGAGGGACTTAAAACCTTTCACTGAGAAGGAATTCGCAACACAACTCCGTGTGATTGCAGGGATGAAGCACCCTAATTTGTTGCCGTTGCTTGCATACTACCATTCAAGAGATGAGAAGCTTCTGCTCTTCAAATATGCAGAGAATGGGAACCTTTTCTCTAGGCTTCATGAAGGTAGAGATGGAAACAGGGCAGCATTTCGATGGAACTCAAGGCTATGTATTGCAAAATCCGTAGCTCGAGCAATGGAGTACCTGCACAATAACACCAAGAACCCTAACATTGTCCCCCACGGCAATCTCAAGACCACAAACGTCCTGATAGACGAAAACGACGTCGCCCTGGTGTCCGACTACGGGCTCTCCGCCCTAATTGCGCAACCTATCGCCGTTCAGCGCATGGTGATTTACAAATCACCGGAATACGCGCAATCGAAGCGAGTGACAGCGCAATCCGATGTGTGGAGCTACGGATGCCTCCTGATTGAGTTGTTAACGGGGAAAATATCTGCGTGCTCTGCTCCGCATGGATCGAACGGTGTTGATCTGTGCGGTTGGGTGCATAGAGCGGTGAGGGAGGAATGGACGGCTGAGATCTTTGATAAAGAGATCTATAGGCAGAAGAATGTGCAGAGTGGGATGATACGGTTGCTTGAGATTGCGATGCTTTGTACGGAGAGGTTCCCGGAGAACCGGCCTGCGATGAGCCAGGTTGTTAGGGAAGTTGAGAACATACAGGCGGCGTCTGAGTTGGGCGATGAGGATGATGTCTCTGCTGATAGGTCTTTCACTGATGATTCTCTTTCTATGTATTCAACCAGTCACTCTGGAACCTTCTTGCAGATTAACTAA 1500 0.452 MGFSPSVLQQLVTSFAVVATLLSIAVGTAHEGPINSLTYSGSLRFIHSHIKEQGNKINNNSPIASVLQDQGNDSSSSDSRSSSHNNTPTLLVILNVVLLLAIILLLMLYYNTSRKLNKMMKVQAHNNNNNKSVVLKEVDKDEVESSIVSEKKIEIGEGTKMTVEDRKELMFFNGNNKTRFQMGQLLRASAETLGQGTMGNSYKAMMHDGPTIVVKRLRDLKPFTEKEFATQLRVIAGMKHPNLLPLLAYYHSRDEKLLLFKYAENGNLFSRLHEGRDGNRAAFRWNSRLCIAKSVARAMEYLHNNTKNPNIVPHGNLKTTNVLIDENDVALVSDYGLSALIAQPIAVQRMVIYKSPEYAQSKRVTAQSDVWSYGCLLIELLTGKISACSAPHGSNGVDLCGWVHRAVREEWTAEIFDKEIYRQKNVQSGMIRLLEIAMLCTERFPENRPAMSQVVREVENIQAASELGDEDDVSADRSFTDDSLSMYSTSHSGTFLQIN 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272875g00004 499 Gene3D Phosphorylase Kinase; domain 1 154 262 - -
Stsc272875g00004 499 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 71 465 IPR046959 -
Stsc272875g00004 499 ProSiteProfiles Protein kinase domain profile. 187 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272875g00004 499 Pfam Protein tyrosine and serine/threonine kinase 191 457 IPR001245 GO:0004672|GO:0006468
Stsc272875g00004 499 SUPERFAMILY Protein kinase-like (PK-like) 191 461 IPR011009 -
Stsc272875g00004 499 MobiDBLite consensus disorder prediction 56 85 - -
Stsc272875g00004 499 Gene3D Transferase(Phosphotransferase) domain 1 263 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272875g00004 Stsc-Chr272875 11036 12710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272875g00004 140 482 Receptor kinase-like Gene Family AT5G58300 40.286 1.05e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc272875g00004 PK_Tyr_Ser-Thr 6.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272875g00004 - - mtr:11421603 527.324