Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272871g00004 ATGGCTTTTCTCACCATGATCATACTCCTCTCCGTCGTAGCGCTTCTTCTTTACAAGCTCTATTTCAGGCTACGGTTCAAGCTCCCACCGGGCCCACGTCCGTGGCCAGTAGTGGGAAACCTCTACGACATAAAGCCCGTGAGGTTCCGATGCTTCGCGGAGTGGGCCCAATCATACGGCCCAATTATCTCGGTGTGGTTTGGATCGACTTTGAACGTGATCGTTTCGAACTCTGAGCTGGCAAAGGAGGTGCTGAAGGAGCATGATCAGCAGCTGGCTGACCGGCACAGGAGCCGGTCGGCGGCGAAGTTTAGCCGCGACGGGAAGGACCTGATTTGGGCCGATTATGGGCCGCACTACGTGAAGGTGAGGAAGGTTTGCACACTTGAGCTCTTCTCACCAAAAAGGCTCGAGTCTTTGAGACCTATAAGAGAAGATGAGGTCACTGCCATGGTTGAATCCATTTTCAATGACTGCACCAATTCTGAAAACATAGGGAAAAGTTTGTTGGTTAAGAAGTACTTGGGAGCAGTGGCATTCAACAACATCACTAGGCTAGCATTTGGCAAAAGATTTGTGAACTCAGAAGGTATAATGGATGAGCAAGGAGTAGAATTCAAGGCTATAGTTTCAAATGGATTGAAGCTAGGAGCATCTCTGGCCATGGCCGAGCACATTCCGTGGCTACGATGGATGTTCCCACTAGAAGAGGAGGCTTTCGCCAAGCACGGTGCTCGCCGCGACAAACTGACCAGAGCCATCATGGAAGAGCACACTCAGGCGCGGCTGAAATCTGGTGCCAAGCAACATTTTGTTGATGCCCTCCTCACATTGCAAGACAAATATGACCTTAGTGAAGACACCATCATTGGTCTACTTTGGGACATGATTACCGCTGGCATGGACACAACAGCAATATCAGTTGAGTGGGCCATGGCTGAACTAATCAAGAACCCAAGAGTCCAACAAAAAGCCCAAGAGGAGATAGACAGGGTAATCGGGCTTGAAAGGATAATGAGCGAATCAGATTTCTCAAGCCTCCCATACCTACAATGTGTGGCAAAGGAAGCCCTAAGGCTCCACCCACCAACCCCATTAATGCTCCCACACAGGGCCAACAGCAACGTCAAAGTTGGTGGCTATGACATACCTAAAGGCTCCAACGTGCACGTGAACGTGTGGGCAGTGGCACGTGACCCAGCTGTATGGAAAAACCCACTTGAGTTCAGGCCCGAGAGGTTCCTTGAGGAGGATGTGGACATGAAGGGGCATGATTTTAGGCTGCTCCCTTTTGGTGCTGGACGTAGGGTGTGCCCCGGTGCACAACTTGGGATCAATTTGGTGACGTCAATGTTGGGTCATCTTTTGCATCATTTTAGTTGGGCCCCACCTGAGGGAATGAGGGCTGAGGAGATTGACATGTCGGAGAATCCTGGGTTGGTGACTTACATGAGAACACCACTTCAGGCTGTGCCTACTCCTAGGTTGCCCTCACATTTGTACAAACGTGTACCTGCTGATATTTAA 1527 0.5036 MAFLTMIILLSVVALLLYKLYFRLRFKLPPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQQLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFSPKRLESLRPIREDEVTAMVESIFNDCTNSENIGKSLLVKKYLGAVAFNNITRLAFGKRFVNSEGIMDEQGVEFKAIVSNGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDKLTRAIMEEHTQARLKSGAKQHFVDALLTLQDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAELIKNPRVQQKAQEEIDRVIGLERIMSESDFSSLPYLQCVAKEALRLHPPTPLMLPHRANSNVKVGGYDIPKGSNVHVNVWAVARDPAVWKNPLEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFSWAPPEGMRAEEIDMSENPGLVTYMRTPLQAVPTPRLPSHLYKRVPADI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272871g00004 508 CDD CYP98 59 490 - -
Stsc272871g00004 508 Pfam Cytochrome P450 29 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 SUPERFAMILY Cytochrome P450 29 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 Gene3D Cytochrome P450 23 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 80 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272871g00004 508 PANTHER CYTOCHROME P450 98A9 7 502 - -
Stsc272871g00004 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Stsc272871g00004 508 FunFam Cytochrome P450 22 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272871g00004 Stsc-Chr272871 10656 14944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272871g00004 6 508 Monolignol Biosynthesis Gene Families AT2G40890 81.746 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272871g00004 K09754 - qsa:O6P43_006317 943.34