Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272854g00007 ATGGCAAATCAAGATTCTTGTTCCACTTCTTCCACCAACCATGGTTGGACATATGATGTCTTTGTGAGCTTCCACGGCAAAGACACGCGTTGCAACTTCACCGGATACCTTACAGATGCCTTGGACAGAAAGGGAATCCTCACTTTCAGGGATGACATAAAGCTCAAGAAAGGAGAAGGGATTCCATCTGCACTGGTCAAAGCAATTGAACAGTCCAGAATTGCTGTGGTTGTTTTCTCAGAAAACTATGCATCCTCAAGTTGGTGTCTTGATGAGTTGGTTGAGATCATTGGGTGCATGAAAAAGAAGGGACAGTTGGTAATTCCAATTTTCTACTCTGTTAATGCTTCTGTGGTAAGGCATCAAAGGGAGAGTTTTGGAAGGTCAATGGAAAAACATGAAGCAAGGCATGACAAAGAGACAGTAAATAAATGGAGGATTGCATTGAAAGAAGCAGCCAATTTGTATGAATATAAGTTTATTCAGCAGATTACTGAAGAAATATCAAACAGATTAAACATTACCTCCTTACACATTGCTGATCACCCAGTTGGATTAAACTATAGAGTGTCAAAAGTGGTGAGGCTTCTAGAACTAAAGTCTAATGATGATACCAAAATGGTTGGAATCTATGGCATTGGTGGGATTGGCAAAACAACCATTGCTAGAGCTGTGTACAACTCAATTTCTAGCAGGTTTGAAGGGTCAAGCTTTCTTGCTGATGTAAGAGAAAACACAATGAAACATGGTTTGGTCCAACTACAAGAGACTCTTCTCCATAATTTGCTTGGAGAAAACATCAAGTTGGGTGATGTGAGCAGAGGAATTCCCGTAATAAACAGAAGGCTTTGCACCAAGAAGGTTCTTTTGATTCTTGATGATGTCGACAACCTGAGGCAACTGAGGTCATTGGCTGGAAGCCATGATTGGTTTGGTTCCGGAAGTAGGATCATCATAACAACAAGAGACAAACATTTGCTAACTACTCATGGGGTTGAAAATGAGAACATATATGATGTGAAACAGTTGAATGATCATGAATCTCTAGAGCTATTTAGTTTAAACGCTTTTAGGAGGAAGCAGCCTAAGGAAAACTATGTCAACATTGCGAACCGAATGGTGCAATATGCCAAAGGCCTTCCACTGGCTTTGAATGTGATTGGTTCTGATCTGTTTGGCAAAACAATTGAAGAATGGGAAAGTGCATTGAAGAAATATGAAAGAATTCCAAGCAGAGAGATCTTAGATGTGCTCAGAGTAAGCTATGATAATTTGGATGATAATGAGAAGGAAATTTTCCTTGACATTGCATGTTTCTTCAAAGGGAATACAAGGCGGGAAGTGGAAAAGACACTAGTTGCGTCACGTTTCTATCCAGAATATGGCATTGGTGTTCTTATTGACAAGTCTCTAGTAACTATCAGTGATGCTGACACAATTAAGATGCATGATCTTATACAGGACCTTGGTAGAGACATTGCTAGAAAGGACTCGCCTTTCGATCCGGGGAAACGTAGAAGACTATGGCACCGTGACGATGTTCTTGAGGTCCTCACAAAAAACACAGGAACTGATGCAATTGAAGGAATAATGTTGGACATGACCAACCTAAAACAAAAAGTTCCATTAGATGCTGAAACCTTTGAGAAGATGAGAAGACTTAGGATTCTTATAGTTCGGAACTCACAAGTTTCCAGAGCTCCCAATCATCTGCCAAATAATTTGAGATTTCTTGATTGGACTGAATATCCTTTACCTTCTTTACCTGCTGATTTTCATCCAGAGACACTTGTTGTACTCAACTTGCCCAATAGTCTTATCACAATGGATGAGCCATTCAAGGCATGTTCATGA 1854 0.4002 MANQDSCSTSSTNHGWTYDVFVSFHGKDTRCNFTGYLTDALDRKGILTFRDDIKLKKGEGIPSALVKAIEQSRIAVVVFSENYASSSWCLDELVEIIGCMKKKGQLVIPIFYSVNASVVRHQRESFGRSMEKHEARHDKETVNKWRIALKEAANLYEYKFIQQITEEISNRLNITSLHIADHPVGLNYRVSKVVRLLELKSNDDTKMVGIYGIGGIGKTTIARAVYNSISSRFEGSSFLADVRENTMKHGLVQLQETLLHNLLGENIKLGDVSRGIPVINRRLCTKKVLLILDDVDNLRQLRSLAGSHDWFGSGSRIIITTRDKHLLTTHGVENENIYDVKQLNDHESLELFSLNAFRRKQPKENYVNIANRMVQYAKGLPLALNVIGSDLFGKTIEEWESALKKYERIPSREILDVLRVSYDNLDDNEKEIFLDIACFFKGNTRREVEKTLVASRFYPEYGIGVLIDKSLVTISDADTIKMHDLIQDLGRDIARKDSPFDPGKRRRLWHRDDVLEVLTKNTGTDAIEGIMLDMTNLKQKVPLDAETFEKMRRLRILIVRNSQVSRAPNHLPNNLRFLDWTEYPLPSLPADFHPETLVVLNLPNSLITMDEPFKACS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272854g00007 617 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Stsc272854g00007 617 Gene3D Ribonuclease Inhibitor 518 617 IPR032675 -
Stsc272854g00007 617 ProSiteProfiles TIR domain profile. 16 153 IPR000157 GO:0007165
Stsc272854g00007 617 SMART till_3 17 155 IPR000157 GO:0007165
Stsc272854g00007 617 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 607 IPR044974 GO:0006952
Stsc272854g00007 617 Pfam TIR domain 18 176 IPR000157 GO:0007165
Stsc272854g00007 617 Gene3D - 342 426 IPR042197 -
Stsc272854g00007 617 Gene3D - 14 177 IPR035897 -
Stsc272854g00007 617 SUPERFAMILY L domain-like 543 609 - -
Stsc272854g00007 617 FunFam Disease resistance protein (TIR-NBS-LRR class) 344 426 - -
Stsc272854g00007 617 PRINTS Disease resistance protein signature 207 222 - -
Stsc272854g00007 617 PRINTS Disease resistance protein signature 377 391 - -
Stsc272854g00007 617 PRINTS Disease resistance protein signature 282 296 - -
Stsc272854g00007 617 Pfam NB-ARC domain 189 409 IPR002182 GO:0043531
Stsc272854g00007 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 436 IPR027417 -
Stsc272854g00007 617 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 174 - -
Stsc272854g00007 617 Gene3D - 178 338 IPR027417 -
Stsc272854g00007 617 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 156 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272854g00007 Stsc-Chr272854 19771 21804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272854g00007 18 605 WRKY Transcription Factor Family AT4G12020 31.405 2.95e-75 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272854g00007 - - pcin:129293148 836.639