Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272854g00006 ATGCAGAAATTTGGGCATTTGACATTTATGAACTTCAGTGGTTGTGACTCTCTAACTACATTACCTGATGTATCTGGAACACCAAATTTAACAAGAATTCTTGCTAATGATTGTCCAAACTTGGTTGAAATTCATGATTCTGTTGGACATCTTAGCAAACTAGTCACACTGAGCACCGAAGGATGTCCCATACTCAAGGGTTTTCCAAGTGGCCTGAGGTCAAAATCTCTGGAATACCTTAACCTTAGGGAATGTTCTAGCATTCAGAGTTTCCCAAATGTTTTGGAAAAAGTGGAAGGTATGAAAAATGTTGATATAGGAGGGACTGCCATAAAAGAGTTTCCAAACTCAGTTGAAAACTTTAGTAGTATTGAAGAGTTAGTTTTAAGATCTTGCAAAAGCTTTGAGGTTCTACCTAGCAATCCTACCATGTTTCAAAACATTGAAGAGCTAAATGTGGAAGAATGTCCTCAACTTCCAAAACTCTTGTGGAAGTTATTGAAGGACAGAACTGATTCCCTCCCAAAGTTAAGTAGACTAACTCTCAAAAGTTGTGATCTATCAGATGAGGATCTAGAGTTAATTCTCAGCTGTTTTCTCCAATTGAAATGGTTGATCCTATCAAATAATAGCTTCACAACTATCCCTGATTGCATTGAAGATCTTTCAAAACTCTTGCTGCTACATGTTGATAACTGCAATCAGCTTAGAGATATTTCAGTGCTTCCACCAGACTTACAACACATAAATGCAAGGAATTGCACATCATTGACTTTGCGGTCATCAGATGTAATATTGAGTCAGGCATTTCATGAAGTAGAGTACATAGACATTGTTGTGCTAAGGAGACAAATTCCAAGATGGTTTGACCATTGCTGCAAAGGAGAATCTGCAGATTTCTGGGTTCGTAGAAAACTCTCCAACATTGCTATATTTTTTCTGTTAGGAGGCCGAGACGAACAGAGAACCGATCATATGTGCGAATTCCACTTGTTCATCAATGACCTCCAAGTATTACAAGGAAAAAGTGAGTGGCCAGTTGATCATGTATGGTTGTTTGATCTGCAAATTCACCTCACAGAAAGCGAACGACACAACATCAGGGAACAAATAAAGTCTGGCTGGAATCATGTGAAGATTTCATGTTCAGTCAAGAATGAGCCAAAAGATGTAATTGTTAAAGGCTGTGGAATCCATCTTTACAAAGACAGAATGAACATTGATGATGTCTCCTTCATTAATCCTGAACTCCATGACTCGAATAATGCCTATGATAACATCAATGATGATTTGGACATTTATGATGAAACAAGGCAAGATGTTGTTTTCCCTACAGTATTAGCTAAATTCTTTCCCAAGAATATTGCTGAGCTCTTGGGAAATCTTCATTCTGGGAAAAGAACAGATGATGATTTGACTTGCTATGATGAGGAGTTGGAACTAGATAGTGAGACTGACAACCAGTACATGGAAGTGGAAGAGGAACAACATTCAGCTTCCATCAATCTTCAAATCCCAGAAATATGCAAAATCTAA 1536 0.3789 MQKFGHLTFMNFSGCDSLTTLPDVSGTPNLTRILANDCPNLVEIHDSVGHLSKLVTLSTEGCPILKGFPSGLRSKSLEYLNLRECSSIQSFPNVLEKVEGMKNVDIGGTAIKEFPNSVENFSSIEELVLRSCKSFEVLPSNPTMFQNIEELNVEECPQLPKLLWKLLKDRTDSLPKLSRLTLKSCDLSDEDLELILSCFLQLKWLILSNNSFTTIPDCIEDLSKLLLLHVDNCNQLRDISVLPPDLQHINARNCTSLTLRSSDVILSQAFHEVEYIDIVVLRRQIPRWFDHCCKGESADFWVRRKLSNIAIFFLLGGRDEQRTDHMCEFHLFINDLQVLQGKSEWPVDHVWLFDLQIHLTESERHNIREQIKSGWNHVKISCSVKNEPKDVIVKGCGIHLYKDRMNIDDVSFINPELHDSNNAYDNINDDLDIYDETRQDVVFPTVLAKFFPKNIAELLGNLHSGKRTDDDLTCYDEELELDSETDNQYMEVEEEQHSASINLQIPEICKI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272854g00006 511 Gene3D Ribonuclease Inhibitor 102 278 IPR032675 -
Stsc272854g00006 511 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 4 97 - -
Stsc272854g00006 511 Gene3D Ribonuclease Inhibitor 1 101 IPR032675 -
Stsc272854g00006 511 SUPERFAMILY L domain-like 3 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272854g00006 Stsc-Chr272854 17971 19596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272854g00006 7 162 WRKY Transcription Factor Family AT4G12020 34.615 2.87e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272854g00006 - - ahf:112751550 926.776