Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272854g00001 ATGGCTACTACCTTGAAGGAATGGGAATTCGACGTGTTCATCAGCTTCAGAGGCCCTGAAACTCGCTACGGTTTCACCGGTTATCTCCACAAAGCTCTCTGCGAAAGAGGAATCCGCACCTTCATGGATCTTGAGGATCTTATTAGTGGCAATAAAATCCAGCAAACATTTGCTCGGGCAGTCGAAAGCTCAAGGATTGCCATCGTCGTGTTCTCAGAGCATTATGCTGACACTTCTTTCTTGCTGAGGGAACTTGCGAAGCTATTGGAGTGCTCTCAACGTTTTGGCCAGTTTGTTCTGCCGATTTTCTATTACGTGGATCCCGGAGATGTGCGGCATCAGAGGGGTAGTTATGAGAAAGCAATGGCGGTGCACGAGGAGCGGTTCAAAGATAAAGCGCCAATCTGGAGAGCCGCTCTGCGTGATGCAGCCAACTTATCCGGTTTGCATTACAAAGGGGATGAATTTGAATATGAATTTATTGAGAAGATCACTAAACAGGTGTTAGCAATTCTGAAAGAGGACACTTTACCTGTTGTTGCTGATTATCCAGTCAGACCAGAGTCCCAAGTGCAGGCTTCCTTTGATTCCTCCTCATCGTTTTCTGTCTCGAGGCAATACCAATACCATGTGTTCCTCAGCTTCAGAGGCTGTGATACTCGCTTTCGTTTCACTGGAAGTCTTTTCAAAGCTCTCCGTGACAACAAAATCCACACCTTCATGGATGATGTAGGTCTTCACAGAGGGAATGATATATCAAGAACGCTTATTGAGGCAATTAAAGGGTCCAGGATTGCCATCATTGTGTTCTCCCAGAACTATGCTGATTCTACTTACTGCTTAGATGAACTTGTCAAGATCTTGGAGTGCCATGAGTCGGATGACCAGTTTGTTTTGCCAGTTTTCTATGAGGTAGATACCAATGACGTGCGACGACAGACAGGTAGTTATGGGGAAGCCATGGCTAACCATGAGGAAAAGTTCAAGGATGACAAATCAAAAATCCAAAAATGGAAGCATGCTTTGCATGAAGCAGCTAACTTTACTGGCTTTTGTTTCAAAGGAAAAAAATATGAACACGAGTTTATTGCGAAGATTGTTGGAGTGGTGTCAAAGGAGATCAAACGTGTTGCGTTACCTGTTGCTGACTATCCAGTTGGACTAGAGTCTCAAGTGTCGAAAGTAAAATCGCTTATATTCTCTGATGGCTATGATGGTGTGCACATGGTAGGGATCCATGGAAATGGTGGATCAGGGAAAACAACAATAGCTCATGCAATTTATCATTTGATTGCTAACGGTTTTGAAAGTATATGTTTTCTTGAGAATGTGAGAGAAAGTTCATATAAGCATGGTTTAGTACATCTTCAGAATATACTACTTGCCAACATATTCGAAAGGAAGAATCTCAAATCAACAAGCGTTGAACAAGGAATTTCAACAATAAGGCACTGGCTCCAACAAAAGAAGATCCTTCTGATTCTAGATGATGTTGACAGGATAGAGCAACTACAAGCTCTTGCTGGAAAACCTGATTGGTTCGGCCGTGGAACTAGAGTTATCATTACAACACGAGACAGGCATTTGCTAGTACGCCATGGGATTGAAAGATTATATGAGCTGGAGAATTCGAATTTGAAGTCAAATATCATTGCATCTGCAAGAGAAGACAGTAGAGAACAAGTGGGTGAAGAAATCACCAGTGAACAAGCCAATGGTTCATTAGAGCCTCTAATTTTGGAAGATACTAATCTTGATATAAGCAAACAAAAGTCGGTTATTCAAGCTGAATCAAATTCACAAGTCATAGGTCAGCTTAGTGAAAGTCAAGAAGAGACTTGTCATACTCATTCTCTAGAGAGAATTGAAAGTGCCAACATCAGTTTGAAAGTGAAGGAAGAACTTGAAGTTAAAGACTTGTCTTTGTGTGCTAAGTTGGCATCTTTGGAGGAAAAGAAAGAGACCTTGAAGAGCAAATTCGTGCCTTAA 1989 0.4198 MATTLKEWEFDVFISFRGPETRYGFTGYLHKALCERGIRTFMDLEDLISGNKIQQTFARAVESSRIAIVVFSEHYADTSFLLRELAKLLECSQRFGQFVLPIFYYVDPGDVRHQRGSYEKAMAVHEERFKDKAPIWRAALRDAANLSGLHYKGDEFEYEFIEKITKQVLAILKEDTLPVVADYPVRPESQVQASFDSSSSFSVSRQYQYHVFLSFRGCDTRFRFTGSLFKALRDNKIHTFMDDVGLHRGNDISRTLIEAIKGSRIAIIVFSQNYADSTYCLDELVKILECHESDDQFVLPVFYEVDTNDVRRQTGSYGEAMANHEEKFKDDKSKIQKWKHALHEAANFTGFCFKGKKYEHEFIAKIVGVVSKEIKRVALPVADYPVGLESQVSKVKSLIFSDGYDGVHMVGIHGNGGSGKTTIAHAIYHLIANGFESICFLENVRESSYKHGLVHLQNILLANIFERKNLKSTSVEQGISTIRHWLQQKKILLILDDVDRIEQLQALAGKPDWFGRGTRVIITTRDRHLLVRHGIERLYELENSNLKSNIIASAREDSREQVGEEITSEQANGSLEPLILEDTNLDISKQKSVIQAESNSQVIGQLSESQEETCHTHSLERIESANISLKVKEELEVKDLSLCAKLASLEEKKETLKSKFVP 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272854g00001 662 Gene3D - 379 536 IPR027417 -
Stsc272854g00001 662 Pfam NB-ARC domain 389 535 IPR002182 GO:0043531
Stsc272854g00001 662 Gene3D - 4 179 IPR035897 -
Stsc272854g00001 662 Gene3D - 202 378 IPR035897 -
Stsc272854g00001 662 PRINTS Disease resistance protein signature 409 424 - -
Stsc272854g00001 662 PRINTS Disease resistance protein signature 485 499 - -
Stsc272854g00001 662 SMART AAA_5 406 545 IPR003593 GO:0016887
Stsc272854g00001 662 Pfam TIR domain 10 171 IPR000157 GO:0007165
Stsc272854g00001 662 Pfam TIR domain 208 372 IPR000157 GO:0007165
Stsc272854g00001 662 SUPERFAMILY Toll/Interleukin receptor TIR domain 200 351 IPR035897 -
Stsc272854g00001 662 FunFam Disease resistance protein (TIR-NBS-LRR class) 205 376 - -
Stsc272854g00001 662 ProSiteProfiles TIR domain profile. 207 374 IPR000157 GO:0007165
Stsc272854g00001 662 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 209 559 IPR044974 GO:0006952
Stsc272854g00001 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 545 IPR027417 -
Stsc272854g00001 662 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 174 - -
Stsc272854g00001 662 SMART till_3 208 348 IPR000157 GO:0007165
Stsc272854g00001 662 SMART till_3 9 146 IPR000157 GO:0007165
Stsc272854g00001 662 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 148 IPR035897 -
Stsc272854g00001 662 ProSiteProfiles TIR domain profile. 8 172 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272854g00001 Stsc-Chr272854 1091 4297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272854g00001 257 551 WRKY Transcription Factor Family AT4G12020 29.667 3.92e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272854g00001 - - aip:107641418 1046.19