Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272853g00003 ATGGCGGCGACAACCACCACTGACGGCGGAGGAGGCGGCGGAGCTGGAGGAGGAGGAGGAGAGGACAGAGTTCTTGCGACTGCACAGCAGATCCTCAAGAGCCTCAACACTCCCAAAGATGTTCGAGAAGACATGCTCCTCATCTTCTCTAGCTTCGATAACCGTCTCTCAAACATCACCGATCTCGTCCACCGCGATGACGACGGCGCCGCCGCCATCGCCGCCGAGGAGCTCGAACGATTCGAGGCAGCCGAGAAGCTCATCCTCCACTGGGACTCCTCTCTCTCCGCCGACCACCACCACTCCGCCGCCTCAGCGATCCTCCTCGATTCCGCCGATGACGCCGCCGACTACTTCTCAGCCGTCGATGACGTCATCCACTGGATCGAACAGCTCTCCCTTGCTCCTCCACCTCATCCGTCGTCCTCCGCCGTCAACCGCCGCAGGATCGAGATCGACCGCGCCGAGAACGCGATCCAGCTCGCTATGACGCGCCTCGAGGAAGAGCTCCGCCACCTCCTCATCCGGAGCACCGTTCCTCTTGATGCGGAGAGCCTCCACGGTTCCATCCGCCGTGTCTCCCTCTCCTTCGCCGATGGCGCTACCGTCGACGAAAATCTCGAGAGCTTCGGTGAGGTCAACGACCAAGGCGGCGACTCCCAGCGGTTCCACGAGCGCGGCGCCAGCCTCGGCGACATCTCAATCGATCTCCTCCGCTCTGACGCGGTGGCGGAACTCAGAGAAATCGTGGATCGCATGGTTAGGTCAGGTTACGAGAAAGAGTGCCTTCAGGTATATAGTAGTGTTCGTCGGGATGTTTTGGATGAATATTTATCAATTCTTGGTGTTGAGAAATTGAGCATTGAAGAGGTTCAGAGAGTTGAATGGAAGAGTTTAGATGAAAAAATGAAGAAATGGATTCAGGCTGTTAAGATTTCTGTTAGGGTTCTTCTCACTGGTGAGAAGAGGGTTTGTGATAGTGTTTTCGGTGATTTGAATGATATTAGAGAGATCTGTTTCAATGAGACTGCTAAAGGTTGTGTTATGCAGTTGCTGAATTTCGGTGAGGCCGTCGCAATTTGCAAGCGGTCGCCGGAGAAATTGTTTAGGATCTTGGACATGTATGAGGCATTGAAGGATGCCTTGCCTGAACTTGAGAATCTGATCACTGATGGGTTTGTGATTGATGAGGCCAGTGGGGTGTTGAAGATGCTTGGTGAGGCTGCTAAGGGGACTTTCGCTGAGTTTGAGAATTGTCTTAGGAATGAGAGTTCTAAGAAGCCGGTTATATCGGGTGATGTTCATCCATTGCCCCGGTATGTGATGAATTACTTGAAGTTGCTTGTTGATTATGGTGAGCCTATGGACTCTCTTCTAGTGATTAGCGACGAGGATCTTTACCGGTTGCAGAATTGTTTTGGCCGTGATAGTTCCCAGATAGAGAACATCTCACCCTTGGGGTGCCGAATGGTGTTGTTGATTTCAGAGCTTGAGAATAACCTTGAGGAGAAATCTAAGCTTTATGAAGATAGTGCAATGCAATGTATATTTTTGATGAATAATATACATTACCTGGTGAGGAAGGTGAAAGACTCGGAGCTTCGAAATGTCTTGGGAGATGATTGGATTCGCAAGCGGCGCGGTCAGGTGCGACAGTATCATACAGGGTACCTCAGAGCCTCTTGGACTAAGGCTTTGTCCTGTTTGAAGGATGAAGGGATTGGAGGAAGCTCTAACAATGCCTCGAAAATGGCTTTGAAGGAGAGGTTCAAGAACTTCAACGCATGCTTTGAGGAAATATATAGGATTCAGTCAGCATGGAAGGTACCAGACCCACAACTCCGGGAAGAACTCCGAATCTCTATATCGGAGAAGGTGATTCCTGCATACCGTTCCTTTGTGGGGCGGTTTCGGAGTCAGCTCGAGGGAAGACATGCCGGGAAGTACATTAAATATACTCCAGATGATTTGGAGGCCTATTTACCGGATTTGTTTGAAGGATCACCTGCTGTATTGCACCACATAAGGAGGAAGAGTCAATAG 2043 0.5086 MAATTTTDGGGGGGAGGGGGEDRVLATAQQILKSLNTPKDVREDMLLIFSSFDNRLSNITDLVHRDDDGAAAIAAEELERFEAAEKLILHWDSSLSADHHHSAASAILLDSADDAADYFSAVDDVIHWIEQLSLAPPPHPSSSAVNRRRIEIDRAENAIQLAMTRLEEELRHLLIRSTVPLDAESLHGSIRRVSLSFADGATVDENLESFGEVNDQGGDSQRFHERGASLGDISIDLLRSDAVAELREIVDRMVRSGYEKECLQVYSSVRRDVLDEYLSILGVEKLSIEEVQRVEWKSLDEKMKKWIQAVKISVRVLLTGEKRVCDSVFGDLNDIREICFNETAKGCVMQLLNFGEAVAICKRSPEKLFRILDMYEALKDALPELENLITDGFVIDEASGVLKMLGEAAKGTFAEFENCLRNESSKKPVISGDVHPLPRYVMNYLKLLVDYGEPMDSLLVISDEDLYRLQNCFGRDSSQIENISPLGCRMVLLISELENNLEEKSKLYEDSAMQCIFLMNNIHYLVRKVKDSELRNVLGDDWIRKRRGQVRQYHTGYLRASWTKALSCLKDEGIGGSSNNASKMALKERFKNFNACFEEIYRIQSAWKVPDPQLREELRISISEKVIPAYRSFVGRFRSQLEGRHAGKYIKYTPDDLEAYLPDLFEGSPAVLHHIRRKSQ 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272853g00003 680 MobiDBLite consensus disorder prediction 1 21 - -
Stsc272853g00003 680 Pfam Exo70 exocyst complex subunit 304 661 IPR046364 GO:0000145|GO:0005546|GO:0006887
Stsc272853g00003 680 FunFam Exocyst subunit Exo70 family protein 101 673 - -
Stsc272853g00003 680 Coils Coil 494 514 - -
Stsc272853g00003 680 Coils Coil 152 172 - -
Stsc272853g00003 680 PANTHER EXOCYST COMPLEX PROTEIN EXO70 78 667 IPR004140 GO:0000145|GO:0006887
Stsc272853g00003 680 SUPERFAMILY Cullin repeat-like 112 666 IPR016159 -
Stsc272853g00003 680 Gene3D Exocyst complex component Exo70 96 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272853g00003 Stsc-Chr272853 17589 20428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272853g00003 22 679 EXO70 exocyst subunit family AT5G50380 60.615 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272853g00003 K07195 - gmx:100818693 925.235