Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272853g00001 ATGTTGGCAAAAGCACTTGCAAAATATTTTGGAGCTAAATTGCTTATATTTGATAGCCATTTACTTCTGGGTGGTTTGTCTTCCAAGGAAGCTGAGTTGCTCAAAGATGGATCCAATGCTGAGAAATCATGCACCTGCACCAAACAAAGTCCTACAGCTACAGATGTGGCTCGTAGTATGGATCCATCAACTAGTGAACCTGATACGCCTAGCTCTTCAAATGCACCTACATTTGGCATCGAGTCTCAACCTAAGATGGAAATTGATAGTGCTCCTTCTACCTCCGGGGCAGCTAAAAGTGGCACCTTTAAACTGGGGGACCGGGTAAAATATAGCTTTTCATCTTCTGGTAGCTTGTATCAGACATCTTCAAGGGGCCCGTCTAATGGGAGCCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTGTGTGTGAGGGAGGTCAAGGATTTTTCTGCAACGTAAGTGATCTTCGTTTGGAGAACACTGTTGTTGAAGAATTGGACAAATTACTTATTAATACGATGTTTGAGGTTGTGTATAGTGAGAGCAGAAGTACACCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCATATTACTTTAAAAGTAAGCTTGAACAGCTTCCTGACAACGTGGTCGTAATAGGTGCACATACTCACACTGACAGCCGGAAGGAGAAGTCACATCCTGGAGGTTTGCTTTTTACAAAGTTTGGGAGCAATCAGACTGCCCTACTTGACCTGGCTTTCCCTGATAGTTTTGGAAGATTACATGACAGAGGAAAAGAAGTCCCTAAGCCAAACAAAACTTTGACTAAGCTTTTCCCAAATAAAGTTACAATTCATATGCCACAGGATGAAGTACTTCTAGCATCTTGGAAGCAGCAACTTGATCGGGATGTTGAGACACTCAAAATCAAAGGAAATTTGCATCAATTACGCTCTGTTTTGAGCCGTTGTGGGTTGGAATGTGAAGGACTTGAAACTGTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAAAAGATAGTTGGTTGGGCTTTGAGCCATCACCTCATGCAGAATTCTGAAGCTGATCCTGATGTAAAACTTGTTCTATCTTGTGAGAGCATCCAGTATGGTATTGGGATTTTACAGTCTATACAGAATGAGTCAAAGAGCCTAAAGAAGTCTCTAAAGGACATTGTGACAGAAAACGAGTTTGAAAAGAGGCTTTTAGCTGATGTTATTCCACCTAGTGACATTGGAGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACGCTCAAGGAGTTAGTGATGCTTCCTTTACAAAGGCCTGAGCTCTTCTGCAAGGGGCAATTAACCAAGCCGTGCAAGGGAATCTTATTATTTGGGCCCCCTGGAACTGGCAAGACAATGCTTGCAAAGGCAGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCCATGTCAAGCATCACATCCAAGTGGTTTGGCGAGGGTGAGAAATATGTAAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCACCTAGTGTTATATTTGTCGATGAGGTTGATAGCATGTTGGGTCGAAGGGAAAATCCCGGTGAGCATGAGGCCATGCGAAAAATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACCGAGCGAGTTCTTGTGCTTGCAGCAACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATAAGGAGGCTGCCACGAAGATTAATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTTATATTGGCTAAAGAGGACTTGTCTCCGGATGTTGATTTTGATGCAATCGCAAATATGACCGAGGGGTATTCTGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCTATTAAAGAGATATTAGAAAAGGAGAAAAAGGAGCAAGCAGCTGCTCTGGCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTTCCGATATCCGGTCTCTAAACATGGAAGACTTTAAACATGCTCATCAACAGGTATGCGCGAGTGTGTCCTCTGAATCCATAAATATGACCGAGCTTTCGCAATGGAATGATCTATATGGTGAAGGTGGTTCAAGAGTAAAGAAAGCACTTAGTTACTTCATGTGA 2259 0.4192 MLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGSNAEKSCTCTKQSPTATDVARSMDPSTSEPDTPSSSNAPTFGIESQPKMEIDSAPSTSGAAKSGTFKLGDRVKYSFSSSGSLYQTSSRGPSNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGVCEGGQGFFCNVSDLRLENTVVEELDKLLINTMFEVVYSESRSTPFILFMKDAEKSIVGNGDPYYFKSKLEQLPDNVVVIGAHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEVLLASWKQQLDRDVETLKIKGNLHQLRSVLSRCGLECEGLETVCIKDQTLTNENAEKIVGWALSHHLMQNSEADPDVKLVLSCESIQYGIGILQSIQNESKSLKKSLKDIVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDVDFDAIANMTEGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAALAEGRPAPALSGSSDIRSLNMEDFKHAHQQVCASVSSESINMTELSQWNDLYGEGGSRVKKALSYFM 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272853g00001 752 CDD RecA-like_ATAD1 451 617 - -
Stsc272853g00001 752 MobiDBLite consensus disorder prediction 40 80 - -
Stsc272853g00001 752 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 751 - -
Stsc272853g00001 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 728 IPR027417 -
Stsc272853g00001 752 SMART AAA_5 484 621 IPR003593 GO:0016887
Stsc272853g00001 752 MobiDBLite consensus disorder prediction 37 80 - -
Stsc272853g00001 752 Gene3D - 620 714 - -
Stsc272853g00001 752 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 446 622 - -
Stsc272853g00001 752 Pfam AAA+ lid domain 641 676 IPR041569 -
Stsc272853g00001 752 ProSitePatterns AAA-protein family signature. 591 610 IPR003960 GO:0005524|GO:0016887
Stsc272853g00001 752 Gene3D - 446 727 IPR027417 -
Stsc272853g00001 752 Pfam ATPase family associated with various cellular activities (AAA) 488 617 IPR003959 GO:0005524|GO:0016887
Stsc272853g00001 752 Coils Coil 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272853g00001 Stsc-Chr272853 2758 8203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272853g00001 447 696 Calmodulin-binding Proteins AT3G56690 39.689 4.41e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272853g00001 - - gmx:100780098 1323.53