Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272847g00001 ATGGAGTTCGGTAGGATCGGACCCACCGACCCAGGTGGTTCCTCACGGCGTTCCACCGCTCCTCTCACCGGAGCTTCTTCCGATTCCACTTCCTCAACAAACAAGAAGAAGCTCATCATGATCTCCCTCCTCGCCACAGCCTTGATAGTCGCCTCCGCCATCTCCGCGGCACTAATCGCCGTCACCCGCTCCCGTGCCTCGGCCGCGAACTCTCTGAACCTCCGCCGGGAACCAACTCAGGCAATCTCCAAGACCTGCAGCAAGACCCGGTTCCCCACACTCTGCATAAGCTCCCTCATGGACTTCCCGGGGTCTGAAACCGCCACGGAGCAAGACCTTGTCCACATTTCCTTCAACATGACCCTCCGCCACGTCAGCAACGCTTTCTACGCTTCCACAGGCATAGCCTTCGGCGACACAGACTCGCGAATCCGTGCCGCCTACGAAGACTGCCTCGAGCTCCTAGATGGCTCCATGGATTCGTTAGCGCGGTCGCTACGCTCGGTCGCTCCATCCCTGGACTCATCCTTCGGCGACGAAGCCATAAGGCCCGCCACCGTGGGATCCGTCGAGGACGTGACGACCTGGCTCAGTGCCGCGCTGACGAACCAGGACACGTGCTCGGAGGGGCTCGAGAACGCGACGGGAACACTGAAGGACCATATGGTTAATAATTTGAAGAACTTGGCGGAACACGTGAGCAATTGTCTCGCGATATTCTCGGCGGGAAGTGGCGGTGGAGATTTCTCGGGGGTGCCGATACAGAACAAGAGACGGTTAATGGGAACCAGAGAGGAGGAGGAGGATAATAATAATAACAATAATGCTGATTCTAATGATGAATCCGATATGTCGCCAGAAAATGATGAGAATAATAATCGTTTCCCGAGATGGTTGAGCAAACGAGATAGGAGATTGCTGAGTTTGCCTGTATCGGCGATACAAGCGGATATAATAGTGTCGAAGAACGGTGATGGAACAGTGAAGACAATCGCAGAGGCGATCAAGAAGGCGCCGGAGAAAAGTAGCCATCGCTTAATAATATACGTTAAGCAAGGAAGGTATGAGGAGGATGATTTAAAAGTGGGTAGAAAGAAAACCAATCTAATGTTCATAGGAGATGGAAAGGGCAAAACCGTCATCACAGGAAATAAAAATGTTGCTGATGGCATGACCACATTCCACACAGCATCCTTTGCTGTTAGTGGTGCCGGTTTCATTGCACGGGACATCACGTTTGAAAATTATGCCGGACCACAGAAGCACCAAGCAGTGGCGCTCCGTGTCAGCGCCGATCACGCGGTGGTTTACCGATGCAGCATCAAAGGCTACCAAGATGCATGCTATGTACATTCCAACCGTCAATTCTTCCGAGAATGCGATATTTATGGCACGGTAGATTTCATTTTTGGAAATGCTGCAGTGGTTTTTCAAAAATGTAACATCTATGCTAGAAAGCCCATGTCCCAACAAAAAAACACAATCACGGCCCAAAACAGAAAGGACCCAAATCAAAACACCGGTATATCCATCCATGATTGTCGGATACTATCCGCCCCGGATCTCGCAGCGGCAAAAGGTAGTGTTTCCACCTATTTGGGCCGCCCGTGGAAACAATACTCGAGAACAGTGTATCTATTGTCTTACATGGGTGATCATATAAACCCTAGTGGGTGGTTGGAGTGGAATGGGGACTTTGCATTGGACACATTGTATTATGGTGAGTATATGAATTTTGGGCCAGGTGCGGCTGTGGGCCAACGGGTCAAATGGAAAGGGTATCGGGTTATCACGTCCACGGTAGAGGCAAATAGATTTACGGTGGCCCAATTCATTTCCGGCTCGGCATGGCTACCGTCCACCGGAGTGGCATTCTTGGCTGGGTTGTCAACTTGA 1896 0.5132 MEFGRIGPTDPGGSSRRSTAPLTGASSDSTSSTNKKKLIMISLLATALIVASAISAALIAVTRSRASAANSLNLRREPTQAISKTCSKTRFPTLCISSLMDFPGSETATEQDLVHISFNMTLRHVSNAFYASTGIAFGDTDSRIRAAYEDCLELLDGSMDSLARSLRSVAPSLDSSFGDEAIRPATVGSVEDVTTWLSAALTNQDTCSEGLENATGTLKDHMVNNLKNLAEHVSNCLAIFSAGSGGGDFSGVPIQNKRRLMGTREEEEDNNNNNNADSNDESDMSPENDENNNRFPRWLSKRDRRLLSLPVSAIQADIIVSKNGDGTVKTIAEAIKKAPEKSSHRLIIYVKQGRYEEDDLKVGRKKTNLMFIGDGKGKTVITGNKNVADGMTTFHTASFAVSGAGFIARDITFENYAGPQKHQAVALRVSADHAVVYRCSIKGYQDACYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMSQQKNTITAQNRKDPNQNTGISIHDCRILSAPDLAAAKGSVSTYLGRPWKQYSRTVYLLSYMGDHINPSGWLEWNGDFALDTLYYGEYMNFGPGAAVGQRVKWKGYRVITSTVEANRFTVAQFISGSAWLPSTGVAFLAGLST 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272847g00001 631 CDD PMEI-like_3 86 245 - -
Stsc272847g00001 631 Gene3D - 311 629 IPR012334 -
Stsc272847g00001 631 NCBIfam pectinesterase inhibitor domain 64 240 IPR006501 GO:0004857
Stsc272847g00001 631 MobiDBLite consensus disorder prediction 1 32 - -
Stsc272847g00001 631 MobiDBLite consensus disorder prediction 12 32 - -
Stsc272847g00001 631 MobiDBLite consensus disorder prediction 262 296 - -
Stsc272847g00001 631 SUPERFAMILY Pectin lyase-like 312 628 IPR011050 -
Stsc272847g00001 631 PANTHER PECTINESTERASE 50 619 - -
Stsc272847g00001 631 Pfam Pectinesterase 317 614 IPR000070 GO:0030599|GO:0042545
Stsc272847g00001 631 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 241 IPR035513 -
Stsc272847g00001 631 ProSitePatterns Pectinesterase signature 2. 462 471 IPR033131 -
Stsc272847g00001 631 SMART PMEI_2 77 239 IPR006501 GO:0004857
Stsc272847g00001 631 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 242 IPR035513 -
Stsc272847g00001 631 FunFam Pectinesterase 311 629 - -
Stsc272847g00001 631 Pfam Plant invertase/pectin methylesterase inhibitor 81 239 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272847g00001 Stsc-Chr272847 5102 13144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272847g00001 1 630 Carbohydrate Esterase AT5G53370 60.032 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272847g00001 - - gmx:106796002 929.472