Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272839g00001 ATGCTAGACAACAACACCAACAACACTGCTTCTTCTTCTTCCCATGCCGCTTTTGCATTCTCCGAAAACAACGCCATCATCCCTAACAAAAGAAAAAGAAGACCCGCTGGAACCCCTGATCCAGATGCGGAAGTGGTGTCTCTATCGCCCAAGACCTTGCTGGAATCGGATCGTTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAAATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTCAAGAGGGACACGGAAGGAGCTGCTGCTACAACCATCATGAAGAAGAAGGTCTTCGTCTGTCCAGAACCGAGTTGCTTGCACCATGACCCGTGCCACGCACTCGGTGACCTCGTCGGGATCAAGAAACACTTCAGAAGAAAGCACAGCAACCACAAGCAGTGGGTGTGCCACAAGTGCTCCAAGGGTTACGCCGTTCAATCCGATTACAAAGCTCACATCAAAACCTGTGGCACCCGCGGCCATTCCTGCGACTGTGGCCGCGTCTTCTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCGTGCACTGTGAGGCAGCATCGACCTGCAGAGATGCAACCACTGCAACAACCGGCATGCTCATCAAGAACAGCTTCAAGCACAAGTCCATCCAGTGACGCTAATTTTACCGTACCTCCCTCACGGCATCAAGGGCTTCCACTACCAAAACCACCCGATCAACAACCACCACCATCTTCAGACATTCACAGGAACCACACTAATAGTAATGCTCACAACTTGGAACTTCAGCTCTTACCCTCTTCAATAAACTCTACTCATCAAAACCAAGAAACACGCTTGAGACTCGCAATAGGTTCATGTGGGAGGGGTATTGAAGAAGAAGAAAGGAACAATAACAATAATGTATTGGAAGTGACGAGGTTGAAGGAGTGTGCTGGAGAGGAGCTGAAGTTGGCAATGGCGGAAAAGGCCTACGCAGAAGAGGCAAGGAGAGAAGCCAAACGCCAGATTGAGATAGCTGAGCTTGAGTTTGAGAATGCAAAGAGGATACGGAAGCAAGCACAAACTGAGCTTGCAAAGGCTGAAGCTTTGAGGAAGCAAGCCATCAAGAAGATGACTTCAACTCTCATGGAGATAACATGCCATGCTTGTAAGCAAAACTTTCACTCTTCCAACAATGGGGTTGCCTTTCCATCTGAAGAGACCTCCATTGTAGTGAGTTACATGTCATCAGCAAATAACACTGATGATGGTGAAGCAGAATAG 1272 0.4906 MLDNNTNNTASSSSHAAFAFSENNAIIPNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDTEGAAATTIMKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPAEMQPLQQPACSSRTASSTSPSSDANFTVPPSRHQGLPLPKPPDQQPPPSSDIHRNHTNSNAHNLELQLLPSSINSTHQNQETRLRLAIGSCGRGIEEEERNNNNNVLEVTRLKECAGEELKLAMAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQTELAKAEALRKQAIKKMTSTLMEITCHACKQNFHSSNNGVAFPSEETSIVVSYMSSANNTDDGEAE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272839g00001 423 Gene3D Classic Zinc Finger 37 108 - -
Stsc272839g00001 423 MobiDBLite consensus disorder prediction 201 255 - -
Stsc272839g00001 423 MobiDBLite consensus disorder prediction 22 46 - -
Stsc272839g00001 423 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Stsc272839g00001 423 Pfam Zinc finger, C2H2 type 143 163 IPR013087 -
Stsc272839g00001 423 MobiDBLite consensus disorder prediction 203 227 - -
Stsc272839g00001 423 MobiDBLite consensus disorder prediction 232 246 - -
Stsc272839g00001 423 SUPERFAMILY beta-beta-alpha zinc fingers 58 162 IPR036236 -
Stsc272839g00001 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Stsc272839g00001 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 387 IPR031140 -
Stsc272839g00001 423 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Stsc272839g00001 423 Coils Coil 318 373 - -
Stsc272839g00001 423 SMART c2h2final6 142 169 IPR013087 -
Stsc272839g00001 423 SMART c2h2final6 59 81 IPR013087 -
Stsc272839g00001 423 SMART c2h2final6 106 136 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272839g00001 Stsc-Chr272839 8117 10709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272839g00001 30 423 C2H2 Transcription Factor Family AT2G01940 57.075 6.76e-148 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272839g00001 zf-C2H2 0.0039 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272839g00001 K25871 - gmx:100806138 527.324