Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272833g00002 ATGGCTCAGTCGTCGTGCCCGGCGGCGCAACTGGCGCAGTACATCGGCAACAACTCGGCAAGCGCTGCAGCCGCTGCAAATCTCATCTGTAACGAGTTCGCCGCCGTGAGTAAGCAGTACACTGACACCAGGCACGCCGTGGACAGCACCTACCTACTCTTCTCAGCCTATCTCGTCTTCTCCATGCAGCTCGGCTTTGCCATGCTCTGCGCTGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACGCCGCCGCCGGCGGGCTCTTCTACTACCTCTTCGGTTTTGCCTTTGCCTTTGGCTCGCCCTCCAATGGCTTCATCGGCCGCCACTTCTTTGGCCTCAACGAAGTTCCTTCACAAGCTCAGGACTTTGACTACAGCAACTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCTGGCATCACCAGCGGTTCCATCGCAGAGCGGACGCAGTTCGTGGCTTACCTCATCTACTCGTCCTTCCTCACTGGCTTCGTCTACCCCGTCGTATCGCATTGGTTCTGGTCCACCAATGGGTGGGCCAGCGCCTTCAACACAGGCAACCTCCTCTTCAACTCCGGAGTCATCGATTTCGCTGGCTCCGGAGTGGTTCACATGGTTGGTGGGATTGCCGGTCTATGGGGTGCCCTTATTGAGGGACCCAGAATAGGCCGGTTTGATCACGCCGGCCGAGCAGTAGCTTTACGTGGGCACAGCGCATCCTTGGTGGTACTTGGTACTTTCATGCTCTGGTTTGGTTGGTACGGATTCAACCCAGGTTCCTTCAACAAGATACTAGTTACCTATGACGGATCTGGCAATTATTATGGTCAATGGAGTGCGGTTGGTAGGACAGCCGTCACTACAACATTAGCCGGTTGTACGGCTGCCCTAACAACTCTTTTTGGGAAGAGGATACTTTCTGGTCACTGGAACGTGACTGATGTTTGTAACGGGTTGCTAGGTGGGTTCGCAGCAATCACCGCCGGGTGCTCTGTGGTGGAGCCTTGGGCTGCTATTGTGTGCGGATTTTTTGCCTCCTTGGTGTTGATTGGCTGCAATAAATTGGCTGAAATAGTCAAATATGATGACCCGTTGGAGGCGGCTCAGCTTCACGGCGGCTGTGGCGCGTGGGGTATCATCTTCACTGCTCTCTTTGCGAAGAAGGAGTATGTGGATCAGGTATATGGGTCGGGTCGTGGGTACGGGTTGTTCATGGGTGGTGGCGGAAAACTGCTGGCGGCGCACGTGATTCAGATTCTGGTTATTATTGGTTGGGTGAGTGCTACAATGGGTCCACTTTTCTATGTTTTGAACAAGATGGACTTGCTTCGGATCTCACCAGAGGATGAACTCGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATGCTTACGAGGATGACGAATCGCACAAGCATGGGATTCAGTTGAAAAGGATTGAGCCAAGTTATGCTTCTTCTACTCCTACCACGGTGTGA 1509 0.5434 MAQSSCPAAQLAQYIGNNSASAAAAANLICNEFAAVSKQYTDTRHAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNGFIGRHFFGLNEVPSQAQDFDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSTNGWASAFNTGNLLFNSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILVTYDGSGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFFASLVLIGCNKLAEIVKYDDPLEAAQLHGGCGAWGIIFTALFAKKEYVDQVYGSGRGYGLFMGGGGKLLAAHVIQILVIIGWVSATMGPLFYVLNKMDLLRISPEDELAGMDLTRHGGFAYAYEDDESHKHGIQLKRIEPSYASSTPTTV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272833g00002 502 ProSitePatterns Ammonium transporters signature. 205 230 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc272833g00002 502 Pfam Ammonium Transporter Family 51 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc272833g00002 502 Gene3D Ammonium transporter AmtB like domains 26 491 IPR029020 -
Stsc272833g00002 502 SUPERFAMILY Ammonium transporter 45 454 - -
Stsc272833g00002 502 PANTHER AMMONIUM TRANSPORTER 19 476 - -
Stsc272833g00002 502 FunFam Ammonium transporter 29 487 - -
Stsc272833g00002 502 NCBIfam ammonium transporter 48 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272833g00002 Stsc-Chr272833 1649 3720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272833g00002 5 502 Inorganic Solute Cotransporters AT4G13510 79.093 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272833g00002 K03320 - gmx:100818774 821.617