LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272831g00001	ATGGCTTCAAATAGTGGTAGCTTTAAGAGCATCAACTCAACAACTACAACAACTACTACTCAACTTGAACAACAACCACCCCACCTTCATCACCATCATCAACATCATCATCAAATACAAGATCAACAACAACAACACCAAATTTCGTTCGGAATGATGCCATCTTCTTCTTCTTCATCTATCCCTGGAAACTACCTAAACAGAGATTCAGGAGCTTATGATTTGGGTGAACTGGATCAAGCTTTTTTTATGTATCTTGATGGTCAGGCTGACCCCTCCAATACTCTTCATGACCAAAGACCAGAGAACTCATCCTCAGGAATGAGGCCACCAACTCTCAACATTTTCCCTTCTCAGCCTATGCACGTAGACCCCCCGCCATCCAATCCCAAGGCTACAACGGAATTGGCTTCTACACAAACCAATAACGGTGGTTCTAAGAAACCATCACAGCCGTCCATGGAATCAGCCAACCCGCGAAATAATGCCGCCTCTGCTCCTGAACCACCCAAACCTATAAAGCGAGAGAACAACCGCAAGGGCACAACTTCAAGTTCTGAACAAGAAGGACCAAAAACTCCAGATCCTAAGACACTCAGGAGACTTGCCCAGAATAGAGAGGCAGCAAGGAAAAGTAGGCTGAGGAAAAAGGCGTATGTTCAACAGCTAGAAACAAGTAGGATTAAGCTGAATCAGTTGGAACAAGAGTTACAGAGAGCAAGAGCTCAAGGTATTTTCATGGGTGGAAATCCACTTTTGGGAGGAGAACAACCCCTTCCTCTTGCTATGAGTACTATTAGCTCAGAGGCGGCAATGTTCGATATGGAATATGCTCGGTGGTTAGAGGAGCACCACCGCGTAGTGTGCGAACTAAGAGCTGCGGTGCAGGAACACCTTCAGGAGAACGAGCTAAGAATGTACGTAGAAAACTGCTTGGGTCATTATGACCAATTGATAAACCTGAAGAGCCTTGTGGCAAAAACAGATGCATTTCATCTTGTATTTGGAATGTGGAAGACACCAACTGAACGCTGCTTCATGTGGATCGGTGGCTTCAGGCCTTCTGAACTCATTAAGGTTATTATGGCTCAAATTGAGCCTCTTACGGAGCAACAAATATTAGGGATATGTGGGTTGCAACAAACAACACGTGAAGCAGAAGAAGCTTTGTCCCAAGGGCTTGAAGCTCTGAACCAATCACTAACAGAAACCATAACATCAGATTCATTGAGTTCTCCTCCAAACATGGTTAATTACATGGGCCAAATGGCTGTGGCCATGAGCAAGCTTTCAACTATCGAAGGTTTCCTTAGGCAGGCAGATAATCTTCGGCACCAAACACTGCACCGTCTGCACCAGCTTCTAACAACACGGCAATCCGCAAGGTGTTTGCTGGCAATAGCTGAGTACTTTCATCGTCTTAGAGCTCTCAGTTCTCTTTGGATGTCACGCCCTCGCCAAGAATAA	1467	0.4526	MASNSGSFKSINSTTTTTTTQLEQQPPHLHHHHQHHHQIQDQQQQHQISFGMMPSSSSSSIPGNYLNRDSGAYDLGELDQAFFMYLDGQADPSNTLHDQRPENSSSGMRPPTLNIFPSQPMHVDPPPSNPKATTELASTQTNNGGSKKPSQPSMESANPRNNAASAPEPPKPIKRENNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGIFMGGNPLLGGEQPLPLAMSTISSEAAMFDMEYARWLEEHHRVVCELRAAVQEHLQENELRMYVENCLGHYDQLINLKSLVAKTDAFHLVFGMWKTPTERCFMWIGGFRPSELIKVIMAQIEPLTEQQILGICGLQQTTREAEEALSQGLEALNQSLTETITSDSLSSPPNMVNYMGQMAVAMSKLSTIEGFLRQADNLRHQTLHRLHQLLTTRQSARCLLAIAEYFHRLRALSSLWMSRPRQE	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272831g00001	488	ProSiteProfiles	DOG1 domain profile.	270	484	IPR025422	GO:0006351\|GO:0043565
	Stsc272831g00001	488	SUPERFAMILY	Leucine zipper domain	197	239	IPR046347	GO:0003700\|GO:0006355
	Stsc272831g00001	488	Gene3D	-	196	245	-	-
	Stsc272831g00001	488	FunFam	BZIP family transcription factor	196	245	-	-
	Stsc272831g00001	488	CDD	bZIP_HBP1b-like	197	249	-	-
	Stsc272831g00001	488	MobiDBLite	consensus disorder prediction	90	200	-	-
	Stsc272831g00001	488	MobiDBLite	consensus disorder prediction	131	163	-	-
	Stsc272831g00001	488	MobiDBLite	consensus disorder prediction	1	65	-	-
	Stsc272831g00001	488	Pfam	Seed dormancy control	288	362	IPR025422	GO:0006351\|GO:0043565
	Stsc272831g00001	488	MobiDBLite	consensus disorder prediction	92	113	-	-
	Stsc272831g00001	488	Coils	Coil	216	243	-	-
	Stsc272831g00001	488	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	200	215	IPR004827	GO:0003700\|GO:0006355
	Stsc272831g00001	488	MobiDBLite	consensus disorder prediction	41	65	-	-
	Stsc272831g00001	488	SMART	brlzneu	193	279	IPR004827	GO:0003700\|GO:0006355
	Stsc272831g00001	488	MobiDBLite	consensus disorder prediction	1	25	-	-
	Stsc272831g00001	488	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	195	239	IPR004827	GO:0003700\|GO:0006355
	Stsc272831g00001	488	PANTHER	TRANSCRIPTION FACTOR TGA9	104	487	-	-
	Stsc272831g00001	488	Pfam	bZIP transcription factor	197	235	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272831g00001	Stsc-Chr272831	35	12195	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272831g00001	63	488	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	63.063	0.0	546

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Stsc272831g00001		DOG1	5.4e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272831g00001	K14431		-	gmx:100799713	707.212