Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272822g00004 ATGGCAGCAGCACAACAAGAATCAGGATCAGAATCAGAATCAGGCATTGGGTTTGAAGGCGTTGACGACTTCTACTACTCAGCCCTCTTTGACGACGATCAAGGTAACCTCGTTCCCATTTCCGATGACAAGTACGCTAATGAATTGCAGTTCCAAGAGACCCTCATGTCCTCCATCATGGCCTCTCAAACCGCCACCAAACCTTCATCATCACCATCATCATCAAAAACCGTTCGTAGTTTTCCATCGTCATCAACACCTTCCTCATCACGACCCGTGTTTGTCGTCCCCAAAACTGAGGAAATAGTGCTGCTGGATGACGACGACGACGAAGAAGAAGAAATGCTAATCATATGCGAGATTTGTGCGGAAACCAAAGCGACTTCTCAGATGTTCAGTAACAAGAAGTGTGATCATTCCTTCTGCTCTGACTGCGTCACCAAGTATGTGGCCACAAAGATCCAAGAAAGCATAACGCTTGTTCCCTGCCCCGGATTGAACTGCAAGGGCGTGTTGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGCTTCTTGATAGGTGGGACGATGCACTCTGTGAGTCCCTCTTTCTTGCGGTTCCCAAATTCTATTGCCCCTATAGGGACTGTTCTGCAATGCTTCTTGATGAGGATGATGAAGGGATTATTAGGGAGGCTGAGTGCCCCTTTTGCCACAGGCTCTTCTGTGCAAGGTGTCATGTTCCATGGCACCCTGGGGTTGAGTGTAGGGTGTTCCAGTCACTGAATGTGGATGAGAGAGGGAGGGAAGATCTTCTTCTTAGGGACCTTGCTGGTCAAAAGAAATGGAGTAGGTGTCCCAGATGCAAGTTCTATGTCGAGAAGAATGGAGGCTGTTTGCATATTGTCTGCAGGTGCAGGTTCGAGTTTTGCTATGCTTGCGGTCAACCGTGGGAGGACGATCATGGTGGCTGCCAAAGGAATTAG 969 0.4881 MAAAQQESGSESESGIGFEGVDDFYYSALFDDDQGNLVPISDDKYANELQFQETLMSSIMASQTATKPSSSPSSSKTVRSFPSSSTPSSSRPVFVVPKTEEIVLLDDDDDEEEEMLIICEICAETKATSQMFSNKKCDHSFCSDCVTKYVATKIQESITLVPCPGLNCKGVLELDSCRPMLPKELLDRWDDALCESLFLAVPKFYCPYRDCSAMLLDEDDEGIIREAECPFCHRLFCARCHVPWHPGVECRVFQSLNVDERGREDLLLRDLAGQKKWSRCPRCKFYVEKNGGCLHIVCRCRFEFCYACGQPWEDDHGGCQRN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272822g00004 322 SMART ibrneu5 187 250 IPR002867 GO:0008270
Stsc272822g00004 322 SMART ibrneu5 260 319 IPR002867 GO:0008270
Stsc272822g00004 322 FunFam RBR-type E3 ubiquitin transferase 114 200 - -
Stsc272822g00004 322 Gene3D - 248 322 - -
Stsc272822g00004 322 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 312 IPR031127 GO:0004842|GO:0016567
Stsc272822g00004 322 Pfam Zinc finger, C3HC4 type (RING finger) 119 164 IPR018957 GO:0046872
Stsc272822g00004 322 ProSitePatterns Zinc finger RING-type signature. 137 146 IPR017907 -
Stsc272822g00004 322 MobiDBLite consensus disorder prediction 60 92 - -
Stsc272822g00004 322 SUPERFAMILY RING/U-box 116 196 - -
Stsc272822g00004 322 ProSiteProfiles Zinc finger RING-type profile. 119 164 IPR001841 -
Stsc272822g00004 322 CDD BRcat_RBR_unk 202 250 - -
Stsc272822g00004 322 Pfam IBR domain, a half RING-finger domain 204 250 IPR002867 GO:0008270
Stsc272822g00004 322 Pfam IBR domain, a half RING-finger domain 271 319 IPR002867 GO:0008270
Stsc272822g00004 322 SUPERFAMILY RING/U-box 261 320 - -
Stsc272822g00004 322 CDD Rcat_RBR_unk 276 312 - -
Stsc272822g00004 322 ProSiteProfiles TRIAD supradomain profile. 115 322 IPR044066 -
Stsc272822g00004 322 FunFam RBR-type E3 ubiquitin transferase 252 322 - -
Stsc272822g00004 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 197 IPR013083 -
Stsc272822g00004 322 SUPERFAMILY RING/U-box 192 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272822g00004 Stsc-Chr272822 15027 16620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272822g00004 119 311 C3H Transcription Factor Family AT2G19610 27.184 1.66e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272822g00004 K11975 - qsa:O6P43_027978 369.392