Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272819g00001 ATGCGAGCTCTTGTACTAATTCTAGTGCTCTGCGCACCTTTCTTATCTTGCGCCGCTGCAGCTGCCGTAGCTGAGATCCAAGCCTTGACGTCCTTCAAGCTCAACCTTCACGATCCTCTAGGAGCTCTCAACGCCTGGGATCCCTCCTCCCCGGCGGCTCCGTGCGACTGGCGCGGCGTTGCCTGCACCGGCGGCCGAGTCACTGAGTTGCGCGTCCCTCGCCTTCAACTCGGGGGCAGACTCACTGAACGAATCTCCGAGTTGCGCATGCTGCGCAAGTTAAGCCTCCGTTCGAACTCCTTTAACGGAACTATTCCTTCGTCTCTTTCCAAATGCACACTCCTGCGCTCTGTCTTCTTGCAGGACAACTCCTTTTCTGGCGTTCTTCCACCGGAGATCGGGAACCTCACCGCTCTTCAGATTTTCAACGTGGCGCAGAACCACCTCTCCGGAGAAGTCCCCGGCGACCTCCCTCTTGGCCTCAAGTACTTCGACCTCTCATCCAACGCATTCTCCGGCGACATTCCGAGCGCTGTTGCCAACCTCTCTCAGCTCCAGCTGATCAACCTGTCCTACAACCAGTTCTCCGGCGAGATTCCGGCGAGTTTCGGGCAGCTTCAGCAGCTGCAGTACCTGTGGCTGGATCACAACCTCCTCGGTGGAACTCTGCCTTCGGCGCTCGCCAACTGCTCTTCTCTGGTGCACCTCAGCGTTGAAGGAAACGCTCTCAGCGGCGTGATTCCATCGGCGATTTCTGCCCTGCCGAGTCTTCAGGTGATGTCTCTATCGCAGAACAATCTCACTGGTTCCATTCCAGCCTCCATTTTCTGCAACGTTTCGGTCCACTCGCCTTCTCTTCGGATAGTTCAACTTGGATTCAACGGTTTCACGGATTTCGTGGGGCCTGAAACGAGGAGCACGTGTTTCACTCTTCTTCAGGTTTTGGATCTTCAGAACAATCACATACGAGGCACCTTTCCCTTGTGGTTAACCAATGTGACTACGCTAACGGTGCTTGACGTTTCCAGCAATGCACTTTCCGGCGAGGTTCCGCCGGAGATTGGGAGCCTCACCAAACTGGAGCAGTTAAAGATGGCCAACAATTCGTTTTCCGGCGTCATTCCGGTGGAAATCAAGAAATGCGGGTCGCTGAGTGTGGTTGATTTTGAAGGTAACGAGTTTTCCGGCCAAGTTCCTTCGTTTTTCGGTGACATGAGAGAACTGAAGCTGCTCTCCCTTGGGGGGAACCACTTCCATGGTTCAGTTCCCGTAAGTTTTGGTAACCTTTCCTCTCTTGAAACGTTGAGTCTGAGAGGTAATAGTTTGAATGGAACTTTGCCTGATACGATAATGGCGTTGAGCAATTTGACCATGCTTGACCTTAGTGGAAACAAGTTTAGCGGTGAAGTACCTGCTACTATTGGAAATCTCAACAGATTGATGGTTCTCAATATCAGCGGCAATGACTTGTCTGGAAAAATTCCTGCTAGTGTGGGGAATCTTTTCAGGCTCACTACACTTGACTTAAGCAAACAGAATCTTTCAGGGGAGCTGCCGTTTGAGCTCTCAGGTCTGCCAAATCTGCAAGCTATTGCTTTGCAGGAGAACAAGTTATCTGGTGATGTCCCTGAAGGTTTCAGCAGTTTGATGAGCTTGCAGTTTTTGAATCTTAGCTCTAATGGCTTTTCTGGCCATATTCCTGAAAACTATGGCTTTCTTCGTTCCCTAACCGTGCTTTCATTGGCTCATAATCGCATTTCAGGGGTTATTCCTCCTGAAATTGGAAACTGTTCTGATATTCAAGTCCTTGAACTTGGATGGAACTCTTTGACAGGTCATATTCCTGTTGATATTTCTCGACTCAACCACTTGAAAGTGCTTGATTTGGGTAGGAACAGTTTATCTGGGGATGTGCCTGGGGATATTTCCAAATGCTCCTCTTTGAATTCTTTGTTAGTGGATCATAACCATCTTTCAGGGGACATACCAGAGGCATTGACAGATCTGTCAAACCTTACAATGCTGGATCTCTCTGCTAATAACTTGACTGGGGAAATTCCTAGTAATCTTTCTATGGTCCCTGGCTTGTTCTACTTCAACGTATCAGGGAACAACCTTGAAGGTGAGATTCCTCCAGCATTGGGCTCTAGATTCAACAATGCCTCTTCATTTGCAGGTAATAAGAATTTATGTGGGAAGCCGTTGGACAGAAACCTACTTAGATGGCGAAAGAGGCTCAAAGAAGGGGTTTCAGGGGAGAAGAAAAAGAGCCCGGCGAGGGCCAGTTCTGGAGCAAGTGGAGGCCGAGGCAGCACTGATAACGGTGGGCCGAAGCTGGTGATGTTCAACACCAAAATCACACTGGCGGAAACAATCGAGGCAACGAGACAATTCGACGAGGAGAATGTGCTGAGCAGAACAAGGTTTGGACTAGTGTTCAAGGCATGCTACAACGACGGCATGGTCCTTTCAGTTCGCAGGCTCCCAGATGGAGCATTGGACGAGAACACGTTCAGAAAAGAAGCTGAATCATTAGGCAAAGTCAGGCACCGAAATCTAACAGTTCTAAGAGGCTACTACGCTGGTCCACCGGACATGAGACTCTTAGTGTACGACTACATGCCAAATGGAAACCTGGCAACACTACTCCAAGAAGCTTCACATCAAGATGGGCATGTTCTAAATTGGCCAATGCGACACCTCATTGCACTGGGAATTGCTCGGGGATTAGCGTTCCTGCACCAGTCCTCAATGGTCCATGCGGACGTGAAACCACAGAACGTGCTGTTCGACGCAGATTTCGAAGCCCATTTATCTGATTTTGGGTTAGAGAGGGTAACAATAGCAACCCCGAGCGAAGCCTCAACTTCAGGGTCAGTTGGCACATTGGGCTACGTATCCCCAGAAGCAATCTTAACTGGGGAAGCCACCAAGGAGTCCGATGTATACAGCTTTGGCATCGTCTTGCTGGAGCTTCTAACGGGAAAGCGACCCGTGATGTTCACCCAAGACGAAGACATTGTGAAGTGGGTGAAGAAGCAACTACAGAGGGGTCAAATTACTGAGCTACTAGAGCCAGGGTTGCTTGAATTGGACCCAGAATCATCAGAGTGGGAAGAGTTCTTGTTGGGTGTGAAAGTAGGCTTGCTTTGCACCGCACCTGACCCTCTTGACCGACCAACCATGTCCGACATCGTTTTCATGCTCGAAGGCTGCCGTGTCGGCCCTGATATCCCATCCTCCGCCGATCCAACCTCTCAACCTTCTCCAGCATAA 3276 0.5006 MRALVLILVLCAPFLSCAAAAAVAEIQALTSFKLNLHDPLGALNAWDPSSPAAPCDWRGVACTGGRVTELRVPRLQLGGRLTERISELRMLRKLSLRSNSFNGTIPSSLSKCTLLRSVFLQDNSFSGVLPPEIGNLTALQIFNVAQNHLSGEVPGDLPLGLKYFDLSSNAFSGDIPSAVANLSQLQLINLSYNQFSGEIPASFGQLQQLQYLWLDHNLLGGTLPSALANCSSLVHLSVEGNALSGVIPSAISALPSLQVMSLSQNNLTGSIPASIFCNVSVHSPSLRIVQLGFNGFTDFVGPETRSTCFTLLQVLDLQNNHIRGTFPLWLTNVTTLTVLDVSSNALSGEVPPEIGSLTKLEQLKMANNSFSGVIPVEIKKCGSLSVVDFEGNEFSGQVPSFFGDMRELKLLSLGGNHFHGSVPVSFGNLSSLETLSLRGNSLNGTLPDTIMALSNLTMLDLSGNKFSGEVPATIGNLNRLMVLNISGNDLSGKIPASVGNLFRLTTLDLSKQNLSGELPFELSGLPNLQAIALQENKLSGDVPEGFSSLMSLQFLNLSSNGFSGHIPENYGFLRSLTVLSLAHNRISGVIPPEIGNCSDIQVLELGWNSLTGHIPVDISRLNHLKVLDLGRNSLSGDVPGDISKCSSLNSLLVDHNHLSGDIPEALTDLSNLTMLDLSANNLTGEIPSNLSMVPGLFYFNVSGNNLEGEIPPALGSRFNNASSFAGNKNLCGKPLDRNLLRWRKRLKEGVSGEKKKSPARASSGASGGRGSTDNGGPKLVMFNTKITLAETIEATRQFDEENVLSRTRFGLVFKACYNDGMVLSVRRLPDGALDENTFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHADVKPQNVLFDADFEAHLSDFGLERVTIATPSEASTSGSVGTLGYVSPEAILTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272819g00001 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Stsc272819g00001 1091 PANTHER UNNAMED PRODUCT 286 1002 - -
Stsc272819g00001 1091 SMART serkin_6 798 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272819g00001 1091 MobiDBLite consensus disorder prediction 748 777 - -
Stsc272819g00001 1091 SMART LRR_typ_2 453 477 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 405 428 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 333 357 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 309 328 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 429 452 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 669 693 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 621 645 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 573 597 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 254 278 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 525 548 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 88 112 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 182 205 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 206 230 IPR003591 -
Stsc272819g00001 1091 SMART LRR_typ_2 136 160 IPR003591 -
Stsc272819g00001 1091 Pfam Protein kinase domain 808 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272819g00001 1091 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 459 740 - -
Stsc272819g00001 1091 SUPERFAMILY L domain-like 476 735 - -
Stsc272819g00001 1091 FunFam Probable LRR receptor-like serine/threonine-protein kinase At4g36180 249 349 - -
Stsc272819g00001 1091 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 874 1077 - -
Stsc272819g00001 1091 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 184 245 - -
Stsc272819g00001 1091 Gene3D Ribonuclease Inhibitor 23 157 IPR032675 -
Stsc272819g00001 1091 Gene3D Phosphorylase Kinase; domain 1 774 873 - -
Stsc272819g00001 1091 FunFam Putative LRR receptor-like serine/threonine-protein kinase 761 873 - -
Stsc272819g00001 1091 Gene3D Ribonuclease Inhibitor 350 451 IPR032675 -
Stsc272819g00001 1091 Gene3D Ribonuclease Inhibitor 247 349 IPR032675 -
Stsc272819g00001 1091 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 22 181 - -
Stsc272819g00001 1091 SUPERFAMILY L domain-like 24 298 - -
Stsc272819g00001 1091 FunFam Piriformospora indica-insensitive protein 2 350 448 - -
Stsc272819g00001 1091 SUPERFAMILY Protein kinase-like (PK-like) 778 1079 IPR011009 -
Stsc272819g00001 1091 Gene3D Ribonuclease Inhibitor 158 246 IPR032675 -
Stsc272819g00001 1091 Gene3D Transferase(Phosphotransferase) domain 1 874 1077 - -
Stsc272819g00001 1091 SMART LRR_sd22_2 453 479 - -
Stsc272819g00001 1091 SMART LRR_sd22_2 333 365 - -
Stsc272819g00001 1091 SMART LRR_sd22_2 254 281 - -
Stsc272819g00001 1091 SMART LRR_sd22_2 206 232 - -
Stsc272819g00001 1091 SMART LRR_sd22_2 621 650 - -
Stsc272819g00001 1091 SMART LRR_sd22_2 669 692 - -
Stsc272819g00001 1091 SMART LRR_sd22_2 573 591 - -
Stsc272819g00001 1091 Pfam Leucine rich repeat 312 369 IPR001611 GO:0005515
Stsc272819g00001 1091 Pfam Leucine rich repeat 647 706 IPR001611 GO:0005515
Stsc272819g00001 1091 Pfam Leucine rich repeat 503 561 IPR001611 GO:0005515
Stsc272819g00001 1091 Pfam Leucine rich repeat 161 219 IPR001611 GO:0005515
Stsc272819g00001 1091 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Stsc272819g00001 1091 Pfam Leucine Rich Repeat 480 501 IPR001611 GO:0005515
Stsc272819g00001 1091 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Stsc272819g00001 1091 ProSiteProfiles Protein kinase domain profile. 798 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272819g00001 1091 SUPERFAMILY RNI-like 246 563 - -
Stsc272819g00001 1091 Gene3D Ribonuclease Inhibitor 452 739 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272819g00001 Stsc-Chr272819 1911 5396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272819g00001 6 1091 Receptor kinase-like Gene Family AT4G36180 68.756 0.0 1476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Stsc272819g00001 Pkinase 3.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272819g00001 - - gmx:100795838 1773.44