Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272818g00004 ATGGTTTATAATTTGTTCTGTATTTGGAACTATGATGGTAAAATTGCATTTGAGGACATCATTGAAGCAACACAGGACTTTGATATCAGATATTGCATTGGAACTGGTGCTTATGGTAGCGTCTACAAAGCCCAACTTCCAAGTGGCAAAACTGTTGCATTGAAGAAGCTTCACAAAACAGAATCAGAAAATCCATCATTTTACAAGAGCTTCTGCAATGAAGTTGAGGTCTTGAAAGAGATTCGTCACCGCAACATCATCAGGCTTTACGGCCATTGTTTGCACAACAGATGCATGTTCTTGGTGTATGAATATCTAGGTCGGGGAAGCTTGTTTTGTAACCTGGCCAATGATGAAGAAGCTCAAGAGCTAAATTGGAGTAAGAGGGTGAATATCATCAAAGGGACAGCTTATGCTCTTGCTCACATGCATCATCACTGTCCTTCTCCTATTGTTCATCGAGATGTCAGTAGTAACAATGTTCTGCTGAATTCAGAGTTAGAAGCTTGTGTCTCAGATTTCGGCACAGCCAGACTTCTCGATCCTGATTCATCTAACCAAACTCTCCTAGTTGGTACTTATGGATATCTTGCTCCAGAATTGGCATACACCATGAGTGTGACTACAAAATGTGATGTGTATAGTTTTGGAGTGGTGGCTTTAGAAACAATGATGGGTCATCACCCAGGAGAATTCATTACCACTCTGTCAAAGCCATGCACTCAACAATTATTGGTGAAAGATTTGTTGGATCCAAGGATTCCACTTCCAACTTGTGGAAAAGATATGCAAGATGTTTTGCTTGTTGTAAAGCAAGCATTAGCATGCCTCTCCTCTGACCCAAAATCAAGACCATCAATGGAGGATGTGGCTAATGAGTTTTCAGCTTCCAAGGCTTCAATGAATTCTTCTTTTTTTGATGTCTCAATCTACCAATTGATGCAATATCAAGTACATGTCCTATGA 966 0.4017 MVYNLFCIWNYDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYKAQLPSGKTVALKKLHKTESENPSFYKSFCNEVEVLKEIRHRNIIRLYGHCLHNRCMFLVYEYLGRGSLFCNLANDEEAQELNWSKRVNIIKGTAYALAHMHHHCPSPIVHRDVSSNNVLLNSELEACVSDFGTARLLDPDSSNQTLLVGTYGYLAPELAYTMSVTTKCDVYSFGVVALETMMGHHPGEFITTLSKPCTQQLLVKDLLDPRIPLPTCGKDMQDVLLVVKQALACLSSDPKSRPSMEDVANEFSASKASMNSSFFDVSIYQLMQYQVHVL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272818g00004 321 Gene3D Transferase(Phosphotransferase) domain 1 107 312 - -
Stsc272818g00004 321 ProSiteProfiles Protein kinase domain profile. 27 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272818g00004 321 ProSitePatterns Tyrosine protein kinases specific active-site signature. 151 163 IPR008266 GO:0004672|GO:0006468
Stsc272818g00004 321 Gene3D Phosphorylase Kinase; domain 1 4 105 - -
Stsc272818g00004 321 SUPERFAMILY Protein kinase-like (PK-like) 15 292 IPR011009 -
Stsc272818g00004 321 PANTHER LEUCINE RICH REPEAT KINASE 2 4 304 - -
Stsc272818g00004 321 FunFam Leucine-rich repeat receptor protein kinase MSP1 2 105 - -
Stsc272818g00004 321 ProSitePatterns Protein kinases ATP-binding region signature. 33 55 IPR017441 GO:0005524
Stsc272818g00004 321 Pfam Protein kinase domain 32 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272818g00004 321 PIRSF ILK 15 305 - -
Stsc272818g00004 321 FunFam MDIS1-interacting receptor like kinase 2 106 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272818g00004 Stsc-Chr272818 20328 21372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272818g00004 6 199 Receptor kinase-like Gene Family AT4G08850 53.299 7.47e-69 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272818g00004 Pkinase 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272818g00004 - - ahf:112730549 589.341