Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272813g00003 ATGGAGATGATGCCATACCAGCTTTCCAGGGCTGCAGCAATTCCAAGAACCAAAGGTGGAACTGTTCTTCAAATGAAATTGGTTTACAATCAGTTGACTCCTTTAGTTCTCTTGTTTCTACAGTGGATGGATTGTTCCTGTGCTAGCTTTCTTCACAGATATCTCAACCTCTTCCACATAGTTATATACAAGGTACATAGTGATGGTAGAAACATGTCTAGTCATGGAAGGAAAGCTACCATAGGAGACTTTTATGCCATTATATTGCCATCTCTCCTGCGGCTTCACGGTAGCTTGGAGAAGTTGGAGACTTCCAAAGAAGGGCAATCATCGAGCACGGAATGTTCAAGTTATGGCAAGAAGATGATTGTTGAAGGTGATGGGAAACTAACCAATGTTGACTTGCAAAGAGAGGATGAATGTGATATTTGCTTAGAGCCCTGCACCAAAATGGTCCTGCCTAATTGTTGCCATGCTATGTGTATCAGATGTTACCGCAAGTGGAACACTCGATCGCAGTCTTGCCCTTTTTGCCGCGGTAGCTTGAGGAGGGTTAATTCCGAGGATCTTTGGGTGCTAACTTGCAATGAAGATGTTGTTGATACTGAAACAGTTTCTAAGGAAGACTTGTGGCGTTTCTACCTCTATATCAATAAGCTACCAAAAGATTACCCAGAAGCACTTTTTGTAATGTACTATGAATATCTCATTTAA 714 0.4174 MEMMPYQLSRAAAIPRTKGGTVLQMKLVYNQLTPLVLLFLQWMDCSCASFLHRYLNLFHIVIYKVHSDGRNMSSHGRKATIGDFYAIILPSLLRLHGSLEKLETSKEGQSSSTECSSYGKKMIVEGDGKLTNVDLQREDECDICLEPCTKMVLPNCCHAMCIRCYRKWNTRSQSCPFCRGSLRRVNSEDLWVLTCNEDVVDTETVSKEDLWRFYLYINKLPKDYPEALFVMYYEYLI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272813g00003 237 PANTHER RING FINGER PROTEIN 41, 151 9 235 - -
Stsc272813g00003 237 ProSiteProfiles Zinc finger RING-type profile. 141 179 IPR001841 -
Stsc272813g00003 237 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Stsc272813g00003 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 189 IPR013083 -
Stsc272813g00003 237 Pfam Ring finger domain 139 179 IPR001841 -
Stsc272813g00003 237 SMART ring_2 141 178 IPR001841 -
Stsc272813g00003 237 SUPERFAMILY RING/U-box 132 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272813g00003 Stsc-Chr272813 16209 18713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272813g00003 60 186 C3H Transcription Factor Family AT5G01960 25.333 6.21e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272813g00003 - - vum:124847610 398.282