LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272801g00001	ATGAAACCTGGAATAGTTGTGCACACGCTAGAGGCAAGCAGAAAAGTGTTGAGTGATGAAAACAAATTTAAGCTAGCTTATCCTGAAACCCATTTAATCGCAACACAATCACCGTTGATCAATGTGTCCAGCGAGGAGCACAAGCGTTTCCGGCGACTGATAACCACCCCCATTCTGGGCTACAATTCTCTAGCCAAGTTTCTAGATCCAATCGAGAGCATTGTGATTGAATCGCTGGAAGAAATGGCGAGCAGAAGCACTAAACAACCTGTTATGCTAATCAAGGAGACCATGGCTCTCTCGTTAAGAGTCATCGTTCACATCTTCATAGGATCTTATCATCATCACAATACAATCCAAAAAGTTCAACATTTATTTGGTGCTATTGATGAAGCCTCGTTCTCTTGGCCAATTAATTTCCCCGGTTTCCCTTATTATAAAGCACTTAAGAATCGTAAGAAGGTGGAAGAAATAGTTAAATCGATTGTGGAGGAAAGGAAGTTGATGATAAAAAATGGTAGTGAAGTGACAGAAAAGAAAGATCTTGTTGATATTCTTCTGGAAGTGGAGGATGTAGATGGTCGAAAATTGAAGGATGAAGACATTGTTAACATGTTGATGGCGTTCTCTTTTGCTGGTCATTTAACTACAGCAACGGCTCTGATGTGGTCTATGGTATATCTCACAAAAAACACTCTCGTCTTAAAAAAAGTCAAGGAAGAGCAGGAAGAAATCTTAAAATCAAGGCCATCTTCGCAAAAGCATTTAAGCATGGAAGAAATTAAGAAAATGGTTTACCTTACTAAGGTTATTAATGAAGTGCTACGCATAATCCAGTGGGCTATTCCATTTTGTCGAAAAGCAACTACCGATGTGGAGATCAACGGTTATATCATACCCAAAGGATGGAGTGTATTTATTTGGCAAAGAGATTATCACAGATCTCCCGAATATTTCCCAAATCCGGAAGAGTTTAATCCTTCTAGATGGGACAATAATGATAACACAAAAGGAGGAGCCTTCTTTCCTTTCGGAGTTGGAACAAGAATATGCCCCGGAAGAGATCTTTCCAAAATTGAAATGTTTGAGCAAATAAATCCAGAATGTCCTCTCTCCTACATGCCAGCACCGATGCCTAAAGATAATTGTCTTGGCAAGGTGACAAAGGTCACCATGGAATAG	1182	0.3976	MKPGIVVHTLEASRKVLSDENKFKLAYPETHLIATQSPLINVSSEEHKRFRRLITTPILGYNSLAKFLDPIESIVIESLEEMASRSTKQPVMLIKETMALSLRVIVHIFIGSYHHHNTIQKVQHLFGAIDEASFSWPINFPGFPYYKALKNRKKVEEIVKSIVEERKLMIKNGSEVTEKKDLVDILLEVEDVDGRKLKDEDIVNMLMAFSFAGHLTTATALMWSMVYLTKNTLVLKKVKEEQEEILKSRPSSQKHLSMEEIKKMVYLTKVINEVLRIIQWAIPFCRKATTDVEINGYIIPKGWSVFIWQRDYHRSPEYFPNPEEFNPSRWDNNDNTKGGAFFPFGVGTRICPGRDLSKIEMFEQINPECPLSYMPAPMPKDNCLGKVTKVTME	393

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272801g00001	393	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	344	353	IPR017972	GO:0005506\|GO:0016705
	Stsc272801g00001	393	Pfam	Cytochrome P450	2	362	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc272801g00001	393	PRINTS	P450 superfamily signature	342	351	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc272801g00001	393	PRINTS	P450 superfamily signature	212	229	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc272801g00001	393	PRINTS	P450 superfamily signature	269	280	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc272801g00001	393	PRINTS	P450 superfamily signature	351	362	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc272801g00001	393	SUPERFAMILY	Cytochrome P450	3	362	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc272801g00001	393	PANTHER	CYTOCHROME P450 26	2	362	-	-
	Stsc272801g00001	393	Gene3D	Cytochrome P450	1	388	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Stsc272801g00001	393	PRINTS	E-class P450 group I signature	201	218	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272801g00001	Stsc-Chr272801	382	6506	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272801g00001	3	388	Cytochrome P450	AT1G05160	39.750	5.58e-105	317

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272801g00001	K04123		-	aip:107647938	515.768

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