Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272801g00001 ATGAAACCTGGAATAGTTGTGCACACGCTAGAGGCAAGCAGAAAAGTGTTGAGTGATGAAAACAAATTTAAGCTAGCTTATCCTGAAACCCATTTAATCGCAACACAATCACCGTTGATCAATGTGTCCAGCGAGGAGCACAAGCGTTTCCGGCGACTGATAACCACCCCCATTCTGGGCTACAATTCTCTAGCCAAGTTTCTAGATCCAATCGAGAGCATTGTGATTGAATCGCTGGAAGAAATGGCGAGCAGAAGCACTAAACAACCTGTTATGCTAATCAAGGAGACCATGGCTCTCTCGTTAAGAGTCATCGTTCACATCTTCATAGGATCTTATCATCATCACAATACAATCCAAAAAGTTCAACATTTATTTGGTGCTATTGATGAAGCCTCGTTCTCTTGGCCAATTAATTTCCCCGGTTTCCCTTATTATAAAGCACTTAAGAATCGTAAGAAGGTGGAAGAAATAGTTAAATCGATTGTGGAGGAAAGGAAGTTGATGATAAAAAATGGTAGTGAAGTGACAGAAAAGAAAGATCTTGTTGATATTCTTCTGGAAGTGGAGGATGTAGATGGTCGAAAATTGAAGGATGAAGACATTGTTAACATGTTGATGGCGTTCTCTTTTGCTGGTCATTTAACTACAGCAACGGCTCTGATGTGGTCTATGGTATATCTCACAAAAAACACTCTCGTCTTAAAAAAAGTCAAGGAAGAGCAGGAAGAAATCTTAAAATCAAGGCCATCTTCGCAAAAGCATTTAAGCATGGAAGAAATTAAGAAAATGGTTTACCTTACTAAGGTTATTAATGAAGTGCTACGCATAATCCAGTGGGCTATTCCATTTTGTCGAAAAGCAACTACCGATGTGGAGATCAACGGTTATATCATACCCAAAGGATGGAGTGTATTTATTTGGCAAAGAGATTATCACAGATCTCCCGAATATTTCCCAAATCCGGAAGAGTTTAATCCTTCTAGATGGGACAATAATGATAACACAAAAGGAGGAGCCTTCTTTCCTTTCGGAGTTGGAACAAGAATATGCCCCGGAAGAGATCTTTCCAAAATTGAAATGTTTGAGCAAATAAATCCAGAATGTCCTCTCTCCTACATGCCAGCACCGATGCCTAAAGATAATTGTCTTGGCAAGGTGACAAAGGTCACCATGGAATAG 1182 0.3976 MKPGIVVHTLEASRKVLSDENKFKLAYPETHLIATQSPLINVSSEEHKRFRRLITTPILGYNSLAKFLDPIESIVIESLEEMASRSTKQPVMLIKETMALSLRVIVHIFIGSYHHHNTIQKVQHLFGAIDEASFSWPINFPGFPYYKALKNRKKVEEIVKSIVEERKLMIKNGSEVTEKKDLVDILLEVEDVDGRKLKDEDIVNMLMAFSFAGHLTTATALMWSMVYLTKNTLVLKKVKEEQEEILKSRPSSQKHLSMEEIKKMVYLTKVINEVLRIIQWAIPFCRKATTDVEINGYIIPKGWSVFIWQRDYHRSPEYFPNPEEFNPSRWDNNDNTKGGAFFPFGVGTRICPGRDLSKIEMFEQINPECPLSYMPAPMPKDNCLGKVTKVTME 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272801g00001 393 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 344 353 IPR017972 GO:0005506|GO:0016705
Stsc272801g00001 393 Pfam Cytochrome P450 2 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS P450 superfamily signature 342 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS P450 superfamily signature 212 229 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS P450 superfamily signature 269 280 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 SUPERFAMILY Cytochrome P450 3 362 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PANTHER CYTOCHROME P450 26 2 362 - -
Stsc272801g00001 393 Gene3D Cytochrome P450 1 388 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS E-class P450 group I signature 201 218 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS E-class P450 group I signature 308 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS E-class P450 group I signature 221 247 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272801g00001 393 PRINTS E-class P450 group I signature 341 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272801g00001 Stsc-Chr272801 382 6506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272801g00001 3 388 Cytochrome P450 AT1G05160 39.750 5.58e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272801g00001 K04123 - aip:107647938 515.768