Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272786g00001 ATGGGTTCCAGCGAGTTGGGCTGCACCTACGCCTCTTTGATTCTCCATGATGAAGATATCCCAATCACGGCGGAGAAGATTAACACTTTGTTGAAGGCTGCTAATGTTACCGTTGAGGCATTCTGGCCCAGCCTCTTCGTTAAGCTTGCTCAGAAGAGGAACATCGAGGATCTCGTCTTGAACGCCGGATCTGGAGGCGGTGGTGCCGTCGCCGTCGCGGCTCCTGCTGGTGGTGCTGCCGCCGGTGGTGCTGCTGATACCGCACCTGCCAAGGAGGAGAAGAAGGAGGAGCCCAAGGAAGAGAGTGACGATGACATGGGTTTCAGCTTGTTTGATTAG 339 0.5516 MGSSELGCTYASLILHDEDIPITAEKINTLLKAANVTVEAFWPSLFVKLAQKRNIEDLVLNAGSGGGGAVAVAAPAGGAAAGGAADTAPAKEEKKEEPKEESDDDMGFSLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272786g00001 112 MobiDBLite consensus disorder prediction 88 106 - -
Stsc272786g00001 112 Gene3D - 2 63 IPR038716 -
Stsc272786g00001 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Stsc272786g00001 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Stsc272786g00001 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Stsc272786g00001 112 CDD Ribosomal_P1 5 61 - -
Stsc272786g00001 112 MobiDBLite consensus disorder prediction 79 112 - -
Stsc272786g00001 112 FunFam 60S acidic ribosomal protein P1 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272786g00001 Stsc-Chr272786 5604 7055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272786g00001 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 55.652 3.37e-37 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272786g00001 K02942 - sly:101249479 137.117