Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272780g00001 ATGGGATTTACATTTACTATGCAAGAAGAAGGGTCATCTTCTGTAACTTCATCACCCCTGCAATTCTTTTCAATGATGTCACTTTCACCTAGCTTGGGATCTCCACACCCCTTGCTTAATGAACTAAAATCTGAGGAAAGGGGTTTGTGCTTGATCCATTTGCTGCTCACTTGTGCAAACCATGTAGCTGCTGGTACTCTTGACAGTGCAAATGCTTTACTTGAGCAAATTTCCATGCTTGCCTCACCTGATGGTGATACTATGCAGCGAATCGCAGCCTATTTTACCGAAGCGCTTGCTGATCGGATACTTAAGACATGGCCTGGGCTGCATAGAGCCCTCAACTCAACTAGAATGGTTATGGTTTCTGAAGAAGTTATCACTAGGAAGCTCTTCTATGAGCTTTTCCCTTTTGTGAAGGTAGCATATGTTCTGACAAATCAAGCTATCATCGAGGCGATGGAAGGCGAGAAAATGATTCATATAATTGATCTCAATGCTGCTGAACCTGCTCAGTGGATTGCACTCCTCCAAGTTCTGAGTGCTCGTCCTGAAGGTCCACCTCATTTGAGAATCACTGGTGTTCATCAGAAGAAAGAGATTCTGGACCAAATAGCTCATAGACTGAGTGAAGAAGCAGAGAAGTTGGATATCCCATTACAATTTAACCCTGTAGTCAGCAAATTAGAGAGCCTAGATTTTGACAAACTTCGTGTGAAAACCGGGGAGGCACTAGCTATAACTTCTATTCTCCAGCTGCATTCGCTTCTGGCATGGGACGACGAAGCTGCGCAGAAAAGAAATCCTCATTTGGCTAGAGCTTCAAATGGAATTCACCAGCAAAGAGCACAGCCTATGTTCCAAAGCTCATTGAGTGATTTGCTTGAGAAAGATACAGCCAATGGATATGCACCTAGTCCTGATTCGGCCTCATCGTCTCCAGCATCGTTAACTGCTTCGAATTCAATGAATATGGAGAGCTTTCTTAATGCATTATGGGGATTATCACCAAAGGTTATGGTTGTAACCGAACAAGACTCCAATCACAATGGTTTGACTCTTATGGAGAGGCTACTAGAAGCTCTATACTCTTATGCTGCATTGTTTGATTGCTTGGAGTGCACTCTGTCGAGGGCATCCTTGGAGAGATTAAGGGTGGAGAAGATGCTATTCGGCGAGGAAATCAAGAACATTGTCGCGTGCGAGGGATTGGAGCGAAGGGAAAGGCATGAGAAGCTGGATAAGTGGATCCAGAGACTTGATTTGGCTGGATTTGGCAACATTCCCTTAAGCTATTTTGGTATGCTGCAAGCAAGGAGGTTGTTGCAGAGCTATAGCTGTGAGGGATACAGAATGAGAGAGGAAAATGGTTGTGTAGTAATTTGTTGGCAAGATAGGCCATTGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1437 0.4384 MGFTFTMQEEGSSSVTSSPLQFFSMMSLSPSLGSPHPLLNELKSEERGLCLIHLLLTCANHVAAGTLDSANALLEQISMLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRMVMVSEEVITRKLFYELFPFVKVAYVLTNQAIIEAMEGEKMIHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGVHQKKEILDQIAHRLSEEAEKLDIPLQFNPVVSKLESLDFDKLRVKTGEALAITSILQLHSLLAWDDEAAQKRNPHLARASNGIHQQRAQPMFQSSLSDLLEKDTANGYAPSPDSASSSPASLTASNSMNMESFLNALWGLSPKVMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLECTLSRASLERLRVEKMLFGEEIKNIVACEGLERRERHEKLDKWIQRLDLAGFGNIPLSYFGMLQARRLLQSYSCEGYRMREENGCVVICWQDRPLFSISAWRSRK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272780g00001 478 ProSiteProfiles GRAS family profile. 42 475 IPR005202 -
Stsc272780g00001 478 MobiDBLite consensus disorder prediction 304 318 - -
Stsc272780g00001 478 Pfam GRAS domain family 51 475 IPR005202 -
Stsc272780g00001 478 MobiDBLite consensus disorder prediction 298 318 - -
Stsc272780g00001 478 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 470 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272780g00001 Stsc-Chr272780 2154 3800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272780g00001 8 478 GRAS Transcription Factor Family AT1G50420 66.528 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc272780g00001 GRAS 4.8e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272780g00001 - - gmx:100814131 762.681