Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272757g00003 ATGTTTTGTTTGATCAGTGATCTTGGAAATGCAAATCTTTCGGGTCCACTAGTTCGAGAGCTTGGTCAGCTTCCGAATTTGCAAAGCCTGGCACTTTTCGATAACAATTTAACCGGGCCTATCCCAAATGAGCTTGGAATGTTGACAAATTTGGATACCTTGGATCTTTACTCAAACAAATTAACTGGTGTCATACCAGACACATTTGGCAACCTCAAAAAGTTACAGAACCTGCGTCTCAACAACAACAGTTTGTCAGGAAAAATTCCCATGTCTTTGACCAATATTATGAGTCTGCAAGTCCTTGATTTATCGAACAACAAGTTAAAAGGAAATATTCCCATCAATGGTTCATTTTCATCATTTACCCCTGTCAGTTTTGGAAATAACCTCTTGAATGAAACAATAAATCCATCTCCACGCTATGTTCCACCACAAAATACCACATCAGGTAACAGGGCCATTGGAGCTATTGCTGGAGGAGTTGCTGTTGCAGCTGCTTTATCCATTGCAGTCCCCGTGATTTCAGTTGCTTACTGGCTACGAAGGAAACCAGAGGATGACTACTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGCCCACTTAAAAAGTTTTCTCTGCATGAGCTGCAATTTGCTACAGATCACTTCAGCGTAAAAAATTTGCTGGGGAAGGGTGCGTTTGGCAAGGTTTATCAAGGACGCTTAGCTGATGGCACTGCTGTAGCAGTGAAACGACTTAAAGAGGAACGCTCCTACACTGAGGACTTTCAGTTTCAAAATGAAGTGGACATGATCAGCAGGGCTAAGCATCGTCATTTGCTTCAACTGCTCGGTTTTTGTATGACTCCTACCGAACGCTTGCTTGTGTATCCTTTGATGTTAAATGGAAGCGTAGCATCATGCTTAAAAGAAGGGCGTCCACAATCAAAACCGCCGCTTAGTTGGGTACAACGGGAGTCTATTGCACTGGGATCTGCCAAGGGGCTTGCTTATTTGCACGATCATTGTAACCCAAAGATAATTCATCGTGATGTTAAAGCCGATAATATATTGCTAGATGAGAACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGTAAAGCTTATGGATTTTAAAGAAACTCATGTTACCACACGTATATGTGGTACACTTGGGCATATAGCACCAGAATACCTCGGAACAGGAAAGTCTTCGGAGAAGACTGATGTTTATGGATATGGCGTGATGCTTCTTGAACTAATAACTGGAAAGAACTCTTTTGACATTGCACGGATTGCCAGAGATGACGATATCTTGTTGCTTGATTGGGTAAAAGGGCATCTGAAAGAAAACACGTTGGACAAACTGGTGGATGGTGCTTTACTGGGAGACTATAGCTTAGAAAAGGTGGGGCAGTTAATCCAAGTGGCCATACTATGCACACAAGACTCTCCTATGGATAGGCCTAAGATGTCTGAGGTAGTGAGAATGCTAGAAGGTGATGGTTTGGCTGAAAGATGGGAAGAATGGAAGAAAAGGGACAAGATCCGGGAAGAATTCGACCGAGCCCACCGTTTCGTTGCCAATTTGAGGAACTATGATGAGTCAACTTCAAATGCCAACATTGAACCGGAACAACTCTCTGGTCCTAGATGA 1647 0.4274 MFCLISDLGNANLSGPLVRELGQLPNLQSLALFDNNLTGPIPNELGMLTNLDTLDLYSNKLTGVIPDTFGNLKKLQNLRLNNNSLSGKIPMSLTNIMSLQVLDLSNNKLKGNIPINGSFSSFTPVSFGNNLLNETINPSPRYVPPQNTTSGNRAIGAIAGGVAVAAALSIAVPVISVAYWLRRKPEDDYFDVPAEEDPEVHLGPLKKFSLHELQFATDHFSVKNLLGKGAFGKVYQGRLADGTAVAVKRLKEERSYTEDFQFQNEVDMISRAKHRHLLQLLGFCMTPTERLLVYPLMLNGSVASCLKEGRPQSKPPLSWVQRESIALGSAKGLAYLHDHCNPKIIHRDVKADNILLDENFEAVVGDFGLVKLMDFKETHVTTRICGTLGHIAPEYLGTGKSSEKTDVYGYGVMLLELITGKNSFDIARIARDDDILLLDWVKGHLKENTLDKLVDGALLGDYSLEKVGQLIQVAILCTQDSPMDRPKMSEVVRMLEGDGLAERWEEWKKRDKIREEFDRAHRFVANLRNYDESTSNANIEPEQLSGPR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272757g00003 548 SMART serkin_6 220 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272757g00003 548 Pfam Leucine rich repeat 49 109 IPR001611 GO:0005515
Stsc272757g00003 548 ProSiteProfiles Protein kinase domain profile. 220 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272757g00003 548 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 506 - -
Stsc272757g00003 548 PRINTS Leucine-rich repeat signature 51 64 - -
Stsc272757g00003 548 PRINTS Leucine-rich repeat signature 96 109 - -
Stsc272757g00003 548 ProSitePatterns Protein kinases ATP-binding region signature. 226 248 IPR017441 GO:0005524
Stsc272757g00003 548 Gene3D Transferase(Phosphotransferase) domain 1 297 515 - -
Stsc272757g00003 548 FunFam Somatic embryogenesis receptor kinase 1 189 296 - -
Stsc272757g00003 548 SUPERFAMILY Protein kinase-like (PK-like) 199 496 IPR011009 -
Stsc272757g00003 548 Gene3D Ribonuclease Inhibitor 5 137 IPR032675 -
Stsc272757g00003 548 SUPERFAMILY L domain-like 7 137 - -
Stsc272757g00003 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Stsc272757g00003 548 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 7 136 - -
Stsc272757g00003 548 Gene3D Phosphorylase Kinase; domain 1 189 295 - -
Stsc272757g00003 548 FunFam Somatic embryogenesis receptor-like kinase 1 297 515 - -
Stsc272757g00003 548 Pfam Protein kinase domain 221 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272757g00003 Stsc-Chr272757 7632 10979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272757g00003 7 548 Receptor kinase-like Gene Family AT4G33430 62.437 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc272757g00003 Pkinase 6.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272757g00003 K13416 - twl:119982367 709.523