Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272757g00002 ATGAGCTTGGATCTGTACTTGAATGAGTTAACCGGCCCTATACCGGACAAATTGAGCAACCTTCAAAAGCTACGTTTCCTGCGTCTCAACAACAATAGTTTGTCAGGAAAAATTCCCAGGTCTTTGACAACTGTGATGTCACTGCAAGTCCTTGATCTATCAAACAATAATTTAACAGGAGATGTTCCAATAAATGGTTCATTTTCAATGTTCACCCCAATCAGTTTTAAAAATAACCCTTACTTAATTGAAACAAACCCCCGATCTCACCCGGTTTCTCCGCCGCCTAATGCTTCTTCAGGTAACAGTGCCACTGCCACTGGATATATTGCGGGAGGAGTTGCTGTAGGTGCTGCTCTGTTGTTTGCAGGCCCTGCCCTTGCAATTGCTTATTTGCGAAGAAGGAAACTGGCGGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGATGTTCATCTTGGTCAGCTTAAAAAGTTTTCGCTGCGTGAGCTGCAAGTTGCTACAGATAGCTTTAGTAGCAAGAATATTCTTGGAAAAGGAGGGTTTGGCAAGGTTTATAAAGGACGCCTTACCAATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACGCAGGGTGGGGAGCTTCAATTTCAAACTGAAGTGGAAATGATTAGCATGGCTGTCCATCGTAATTTGCTCCGGCTGCATGGTTTTTGTATGACACCTACAGAACGGTTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCATCTTGTTTAAGGGATCGTCCAGAAACATGTCCACCACTTGACTGGGGAAAACGGAAGAGTATAGCACTGGGGTCTGCTAGGGGACTTGCTTATCTGCATGATCATTGTGATCCAAAGATTATTCACCGGGATGTCAAAGCTGCTAATATATTGCTGGATGAGGATTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTGATGCATTACAGAGATACTCATGTTACCACCGCTGTACGTGGTACAATCGGGCATATTGCGCCGGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGCGTGATGCTTCTTGAAGTGATAACTGGACAGAGGGCTTTTGATCTAGCTCGTCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGGCTTCTGAAGGACAAGAAGTTGGAGACACTGGTTGATGCAGATTTACAGGGAAATTATGAAGATGAAGAGGTAGAGCAACTGATCCAGGTTGCCTTATTGTGCACACAAAGCTCCCCTATGGAAAGGCCTAAGATGTCTGAGGTTGTGAGAATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGATCATTGGCAGAATGAGGAGATGAAGATGAGCCAGCATGAATTCAACCACAGACACTATCGCTTTACTGATACACCCGACTCCACTTTCAATCTCCCAGCAGACGAACTCTCTGGTCCCAGATGA 1491 0.4413 MSLDLYLNELTGPIPDKLSNLQKLRFLRLNNNSLSGKIPRSLTTVMSLQVLDLSNNNLTGDVPINGSFSMFTPISFKNNPYLIETNPRSHPVSPPPNASSGNSATATGYIAGGVAVGAALLFAGPALAIAYLRRRKLADYFFDVPAEEDPDVHLGQLKKFSLRELQVATDSFSSKNILGKGGFGKVYKGRLTNGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMANGSVASCLRDRPETCPPLDWGKRKSIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMHYRDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLEVITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYEDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKWDHWQNEEMKMSQHEFNHRHYRFTDTPDSTFNLPADELSGPR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272757g00002 496 Gene3D Ribonuclease Inhibitor 1 95 IPR032675 -
Stsc272757g00002 496 Pfam Protein tyrosine and serine/threonine kinase 175 446 IPR001245 GO:0004672|GO:0006468
Stsc272757g00002 496 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 456 - -
Stsc272757g00002 496 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Stsc272757g00002 496 FunFam Somatic embryogenesis receptor-like kinase 1 249 466 - -
Stsc272757g00002 496 SMART serkin_6 172 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272757g00002 496 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 79 - -
Stsc272757g00002 496 ProSiteProfiles Protein kinase domain profile. 172 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272757g00002 496 Pfam Leucine Rich Repeat 23 42 IPR001611 GO:0005515
Stsc272757g00002 496 Pfam Leucine Rich Repeat 47 61 IPR001611 GO:0005515
Stsc272757g00002 496 SUPERFAMILY Protein kinase-like (PK-like) 152 447 IPR011009 -
Stsc272757g00002 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Stsc272757g00002 496 SUPERFAMILY L domain-like 2 74 - -
Stsc272757g00002 496 Gene3D Phosphorylase Kinase; domain 1 141 248 - -
Stsc272757g00002 496 Gene3D Transferase(Phosphotransferase) domain 1 249 466 - -
Stsc272757g00002 496 FunFam Somatic embryogenesis receptor kinase 1 141 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272757g00002 Stsc-Chr272757 2363 5851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272757g00002 1 496 Receptor kinase-like Gene Family AT4G33430 72.110 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc272757g00002 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272757g00002 K13416 - sind:105169199 761.911