Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272754g00001 ATGTGGCTTAAAACTAAGCCACCACTCCACTATTATTCACAATGGGATCCAAAGGATCTAAGCCACGTCTTGCGGGAAAACAAGGAAGCAGAGAACCTTGAAGCTATAGTTGTGCGATATCATGAAATTAGGGAAGAGTTAAATGTTGAAGCTTTATCAAAAATGAGTCGGCTGAAACTACTAAGGCTTGGCAAAGTGAATTTCTCAGGAAGGCTGCATTTTCTTTCTAATGAGTTGGCATATCTTGCTTGGGATAACTTTCCTTTCACATGTTTGCCATCAAGCTTTCAGCCAAATAAACTCGTTGAATTATTCCTAACTCATAGCAACATCCAAGAACTTTGGGAGGGAATAAAGGTATGTCATAATAATATTGTCTTCTTTTGCTCATCTTAA 396 0.3813 MWLKTKPPLHYYSQWDPKDLSHVLRENKEAENLEAIVVRYHEIREELNVEALSKMSRLKLLRLGKVNFSGRLHFLSNELAYLAWDNFPFTCLPSSFQPNKLVELFLTHSNIQELWEGIKVCHNNIVFFCSS 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272754g00001 131 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 119 IPR044974 GO:0006952
Stsc272754g00001 131 SUPERFAMILY RNI-like 30 123 - -
Stsc272754g00001 131 Gene3D Ribonuclease Inhibitor 16 130 IPR032675 -
Stsc272754g00001 131 Pfam Leucine Rich Repeat 100 119 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272754g00001 Stsc-Chr272754 960 1561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272754g00001 15 124 WRKY Transcription Factor Family AT4G12020 30.833 6.55e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272754g00001 - - ahf:112732546 139.813