Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272747g00001 ATGAAGACCCGTTCATCCAAATGGGTTATTTCCGTCGCGGTTACTTTCTTCTGCTTCCTCGCATGCTTCGAAATCCAAGCCAAAACCATCGACCCTTATAAGGTTCTTGGGGTGGATAAGAATGCAAGTCAGAGGGAAATTCAGAAGGCTTTCCACAAGCTCTCTCTTCAGTATCACCCTGACAAGAACAAAGCCAAGGGTGCACAAGAGAAGTTTTCTCAGATTAACAATGCATATGAGATTTTATCTGATGAGCAGAAAAGGAAGAATTATGACATGTATGGAGATGAGAAAGGACAGCCTGGATTTGAAGCTGGGCAACCTGGAGGTCAGGGTGGATATTCTTATTTCACAGGTGGTGGACCGGGGCAAAGCCATTTCAACTTTAGACCCGGGGACTGGCAGGGTATGGGTGGGCAAGGAGGAGGATCCAAGTCATTCTCCTTTTCCTTTGGTGGGCCTGGTGGGTCTGGTGGATCTGGCGGTTCTTTTGGATTCGATTTGAATGATATTTTTGGTAGTTTTTTTGGTGGTGGCAGAGGAGGAGGTGGTGGCCCTGGTGGGAGTCAGTTTGGGGGTTTTGGCAGTGGTTCAACCGGTTCTCAGTCTGGAGGTTTTGGTAGTTCAACTGGTTCTCAATCTGCGTCCAAGAAATCCTCTAAAAGCTTTAAAGCCATAAATTCACGAGTATATGAGAAAGAAATATTTGATCAGGGGATGACATGGATTGTCTTAGCTTATACATCGTCATTGAAGGGGATCCAACACTTAGAATCTGTTGCTGAGGAGACTTCTAGTTCGTTGCAAGGGGCATTGAAGGTTGGAAGTATTAATTGTGAAAAGGAAGTATCATTCTGTAAGGAGATTGGTGTGAATCCACGCAGAGCACCACGGCTTTTTGTTTATTCTTACAAGGATAGTGAAAAGGGTTCTTTGGTCGAGTATACTGGTGACTTGTCTGTCAAGGATTTGAAGGCTTTTTGTCAAGAACACTTGCCTAGGTTTTCCAACCGGATTGACTTGAAATCTTTTGATCAATTAAGTGCTACTCGAAAGTTGCCAAGGGTGATGCTTCTCTCAACCAAAAAAGACACTCCTGTAATCTGGCGTGTGCTTAGTGGCTTGTATCATAAACGCTTCGCTTTCAATGATGCACAGGTTCAAGATGTTTCTGATCCAAGAGTGAAAAAGCTAGGAGTTGATGGGATTCCAGCTATTGTAGGTTGGCTACCTAACGGAGAGAAACGCGTCTTGAAATCAGGGATTTCTGTAAAAGATTTGAAATCCGCAGTTGTTGATCTTAGTAGTCTACTTGACAGTTTCGAAAAATTATGTAAAAAGGAAGCATCTGGTCATGCTAAGACAGAAACAGATTCTGAAGAGGGACATATACAGTTGCTTTCTAAGTCTAACTTCGAGGAGCTTTGCGGTGATAAAGCTCCAGTATGCATCATTGGCGCATTCAGATCTTCTAAAGCCAGAGAAAAGCTAGAGTCAATTCTCTCTTATGTCTCCCAGAAATCACTTTCAAGGCGACCAAGTCAAGGACCCAGCTCTAGGGATTCAATCTCCTACTCTCTCTTAGATGCTGCAAAGCAAGAATCATTTCTAAAGGCATTCAACAAGACAGATTCCAAGTCATCAGATAAATTGTTGATCGCCTACAAGCCTAGGAGACGTAAATACACTGTATTTATGGGTGATATGACAATGGAGGAGGTTGAGACTTTCATTAGCTCAGTCCTCAGTGGAGATATACCCTTCAGGGAAACACAAAATAAACCTGTACTCAAGTAG 1797 0.4318 MKTRSSKWVISVAVTFFCFLACFEIQAKTIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFSQINNAYEILSDEQKRKNYDMYGDEKGQPGFEAGQPGGQGGYSYFTGGGPGQSHFNFRPGDWQGMGGQGGGSKSFSFSFGGPGGSGGSGGSFGFDLNDIFGSFFGGGRGGGGGPGGSQFGGFGSGSTGSQSGGFGSSTGSQSASKKSSKSFKAINSRVYEKEIFDQGMTWIVLAYTSSLKGIQHLESVAEETSSSLQGALKVGSINCEKEVSFCKEIGVNPRRAPRLFVYSYKDSEKGSLVEYTGDLSVKDLKAFCQEHLPRFSNRIDLKSFDQLSATRKLPRVMLLSTKKDTPVIWRVLSGLYHKRFAFNDAQVQDVSDPRVKKLGVDGIPAIVGWLPNGEKRVLKSGISVKDLKSAVVDLSSLLDSFEKLCKKEASGHAKTETDSEEGHIQLLSKSNFEELCGDKAPVCIIGAFRSSKAREKLESILSYVSQKSLSRRPSQGPSSRDSISYSLLDAAKQESFLKAFNKTDSKSSDKLLIAYKPRRRKYTVFMGDMTMEEVETFISSVLSGDIPFRETQNKPVLK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272747g00001 598 Coils Coil 65 85 - -
Stsc272747g00001 598 MobiDBLite consensus disorder prediction 182 218 - -
Stsc272747g00001 598 Gene3D Glutaredoxin 463 588 - -
Stsc272747g00001 598 Gene3D Glutaredoxin 209 331 - -
Stsc272747g00001 598 SUPERFAMILY Thioredoxin-like 463 587 IPR036249 -
Stsc272747g00001 598 SUPERFAMILY Chaperone J-domain 19 98 IPR036869 -
Stsc272747g00001 598 Pfam DnaJ domain 31 92 IPR001623 -
Stsc272747g00001 598 PRINTS DnaJ domain signature 67 87 IPR001623 -
Stsc272747g00001 598 PRINTS DnaJ domain signature 51 66 IPR001623 -
Stsc272747g00001 598 PRINTS DnaJ domain signature 87 106 IPR001623 -
Stsc272747g00001 598 PRINTS DnaJ domain signature 33 51 IPR001623 -
Stsc272747g00001 598 PANTHER DNAJ PROTEIN ERDJ3A 1 598 - -
Stsc272747g00001 598 CDD DnaJ 31 84 IPR001623 -
Stsc272747g00001 598 MobiDBLite consensus disorder prediction 192 218 - -
Stsc272747g00001 598 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
Stsc272747g00001 598 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Stsc272747g00001 598 SMART dnaj_3 30 87 IPR001623 -
Stsc272747g00001 598 SUPERFAMILY Thioredoxin-like 225 333 IPR036249 -
Stsc272747g00001 598 Gene3D DnaJ domain 28 186 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272747g00001 Stsc-Chr272747 10520 14306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272747g00001 33 94 C2H2 Transcription Factor Family AT1G74250 42.647 2.29e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272747g00001 - - adu:107484989 899.042