Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272746g00001 ATGGGAAGAGGGAAGATTGTGATTCGGAGGATCGATAATTCGACCAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGTTTGATCAAGAAAGCAAAGGAGCTTGCTATCCTTTGTGATGCAGAAGTTGGTCTTGTCATATTCTCCAGCACTGGAAAACTTTATGAATATGCAAACACAAGCCTGAAATCAGTGATTGAGAGATATAACGCATGCAAGGAGGAAGAACAACAACTCATAAATCCAGAATCTGAGGTTAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAGAATCTCCAAGAAAATCATCGGCAATTGATGGGACAACATCTTTACGGTTTGAGTGTGAGAAACCTACAAGATCTAGAGAACCAACTAGAAATGAGTCTCCAAGGTGTTCGAATGAAAAAGGAACAAATTCTAACAGAAGAAATCAAGGAGCTGAACCGAAAGGGAAACCTTATCCATCAGGAAAATTTGGAACTTTTTAAGAAAGTAAACCTCATGCAGGAGGAAAACACACAACTATGCAAAAAGGTGTATGGCACAACAGAAATGGAAGCAACAAGCAGAAATGGATTTATTCCAATTCCATATGGTATTCAAGTAGGAGGAGGAAACTCACGGGCATTAGTCCAACTTCAGTTATGCCAGACAGAGCAAGAAGCCTGTGAGACTTCAGGAAGTGGAACAAAATGA 711 0.4051 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEYANTSLKSVIERYNACKEEEQQLINPESEVKFWQREAEILRQQLQNLQENHRQLMGQHLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIKELNRKGNLIHQENLELFKKVNLMQEENTQLCKKVYGTTEMEATSRNGFIPIPYGIQVGGGNSRALVQLQLCQTEQEACETSGSGTK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272746g00001 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc272746g00001 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc272746g00001 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc272746g00001 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc272746g00001 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc272746g00001 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc272746g00001 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Stsc272746g00001 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc272746g00001 236 Coils Coil 123 143 - -
Stsc272746g00001 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc272746g00001 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Stsc272746g00001 236 Coils Coil 86 113 - -
Stsc272746g00001 236 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Stsc272746g00001 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc272746g00001 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc272746g00001 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272746g00001 Stsc-Chr272746 6033 14978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272746g00001 1 234 MADS-box Gene Family AT2G22630 62.393 8.94e-99 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc272746g00001 K-box 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272746g00001 K09264 - gmx:100795778 358.221