Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272745g00001 ATGCCTTCTTCATCCACAACCATAATTTCAAAATGCACAATCTACCCGGACCAAGAATCCACCCTCAAACCCTTACACCTCTCTGTATCTGACCTTCCCATGCTTTCTTGCCACTACATCCAAAAGGGAGTCCTCCTTTCTTCTCCCCCTCAACCCTTTCAAGACCTCATCGATTCCCTCAAGCTCTCTCTCTCCTCCTCTCTCTCTCTATTCCCCGCCCTCGCCGGCCGATTCTCCACCGACTCCTCCGGCCATGTAAACATCGTTTGTAACGACGCTGGAGTTGATTTCATTCACGCCAATGCCAAGCACCTTACCGTCGCCACCCTCCTCTCCCCGCCGGCCAATTTCCCCGACGTGCATCCTTCCTTCAAGGAATTCTTTGCTTATGATATGACAATCTCTTACTCCGGCCACAACCTCCCCCTCGTCGCGGTTCAAGTCACCGAGCTCGCCGACGGTGTCTTCATCGGTATCACCGCCAATCACGCAGTCACAGACGGTACCTCCTTCTGGCACTTCTTCAACACATTCGCCGCCGTCACCAAGGCCGCCGGCTCCGGCGCCAAAAAGAAGATCGCTCGCCACCCGGACTTCACTCGCGACACGGTTTTCAACTCCTCCGTCGTCCTCCCCGTCCCCGCCGGCGGTCCCACCGTGACGTTCGACGCCGACGAGCCTCTCCGGGAGCGAGTCTTTCACTTCTCCAGGGAAGACATACAGCGACTGAAAAAGCAAGCTAACAATAACCGCCACAAAAGCAACGACGGTTGGAAAGCCGTTGGAGTTAACGGCAACGGAAACTGTAACGGAAACGGGACTGTTAATGTGAGGAATAACGACGAGATCTCGTCGTTTCAATCGTTATCTGCTCAGCTTTGGCGATCCGTGACACGTGCCAGGAAATTAGACGCTTCCAAAACGTCGACGTTTCGGATGGCCGTTAATTGCCGTCACCGTTTGGAGCCAAAGATGGATCCGTTTTACTTTGGGAACGCGATTCAGAGCATCCCAACGGTTGCAACGGTTGGGGATATTGTTTCTAAGGACCTCGGCTTCTGCGCCGAACTGCTGCACGGTAACGTGGTCGCCCACGACGATGCTACGGTGCGGCGCGGCGTAGAAGACTGGGAGAAGGCTCCGAGATTGTTTCCTCTGGGAAACTTCGACGGAGCCATGATTACTATGGGGAGTTCGCCGCGTTTTCCGATGTACGACAATGATTTCGGGTGGGGAAAACCGTTGGCGATTCGGAGCGGGAAGGCGAACAAGTTCGACGGCAAGATCTCGGCGTTTCCCGGTAGGGAAGGAAACGGCAGCGTTGATCTTGAAGTCGTTTTGGCACCAGACACGATGACGGGACTCGAAAACGACATGGAGTTTATGCAGTACGTGACGTCGTTCGAATAA 1410 0.544 MPSSSTTIISKCTIYPDQESTLKPLHLSVSDLPMLSCHYIQKGVLLSSPPQPFQDLIDSLKLSLSSSLSLFPALAGRFSTDSSGHVNIVCNDAGVDFIHANAKHLTVATLLSPPANFPDVHPSFKEFFAYDMTISYSGHNLPLVAVQVTELADGVFIGITANHAVTDGTSFWHFFNTFAAVTKAAGSGAKKKIARHPDFTRDTVFNSSVVLPVPAGGPTVTFDADEPLRERVFHFSREDIQRLKKQANNNRHKSNDGWKAVGVNGNGNCNGNGTVNVRNNDEISSFQSLSAQLWRSVTRARKLDASKTSTFRMAVNCRHRLEPKMDPFYFGNAIQSIPTVATVGDIVSKDLGFCAELLHGNVVAHDDATVRRGVEDWEKAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGKPLAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPDTMTGLENDMEFMQYVTSFE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272745g00001 469 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 463 - -
Stsc272745g00001 469 SUPERFAMILY CoA-dependent acyltransferases 57 188 - -
Stsc272745g00001 469 Gene3D - 6 211 IPR023213 -
Stsc272745g00001 469 Pfam Transferase family 6 462 - -
Stsc272745g00001 469 Gene3D - 216 458 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272745g00001 Stsc-Chr272745 7617 9026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272745g00001 60 457 Monolignol Biosynthesis Gene Families AT5G48930 26.521 1.11e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272745g00001 - - gmx:100780358 708.368