Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272726g00004 ATGAGAAGGTTCACGTGGTTTGCGCCGTATCGCCGCCGTGTGCTCTCTTCTTTCCCCTTTTCAGAACCCGTCGTCCATAGAGGACACTACTTCACCGAATTATCGCCTTTTCGCCAATCGCAATTGCTCGATCGAGCTTTGTTCAATCGCAGTTATGTCCCGAAATCAGAGGAGTTTCTGAGTTCGAGTAAACCGTTGATATATCGATATATTCATGCTGCAGCATTTTCAACATCGGTTGAGCAGGATTATTATCAAGTTCTTGGCATTTCTAAAAACGCCACACAGGATGAGATAAAGAAGGCGTTTCTGCTGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCAAAGAGGAAATTTCAAGATATAAGAGAAGCTTATGAGACGTTGAGAGATTCTAAAAAGAGGGCCCAATATGACAAGATGAAGATGCAAAGTCGTGGTTCGCAGAACATAGAATATGATGACGATGATGATGATTTTGCAGAAAGGTTTCGAAATGGTTTTCACCATGATTTTTCTTCTTCATTTCATACAGTATTTTCCGAGATATTTGAAGAAGAAATCAGTCATTCTTCATCAAGTATAGAGGTGGAGTTGTCCCTTACTTTCTCAGAAGCTGCAAGAGGGTGCACTAAACATGTGTCATTTGATGCACTTGTTCCATGTGACTATTGTGATGGCAGAGGATATCCACCACGTGCGAAGGCTAAAGTATGTCCAACATGCCGGGGCTTAGGTCGGGTAACGATTCCTCCGTTTACATCAACATGTGTTACCTGTAAAGGATCAGGTCGCGTCATCAAGGATTTTTGTACATCATGTAGAGGATCTGGGGTGGTTGAAGGGATTAAAGAAGTTACTGTTACAATACCAGCAGGTGTGGATACTGGAGATACAATCCATGTGCCAGAGGCCGGGAATGCCCTTAAACGTGGAGCTCGACCTGGGAGTTTATACATCAAAATCAAGGTCGCCGAGGATTCAGTCTTTGTCAGGGATGGTGCAGATATCTATGTGGACTCTAATATTAGCTTTACCCAGG 1060 0.4292 MRRFTWFAPYRRRVLSSFPFSEPVVHRGHYFTELSPFRQSQLLDRALFNRSYVPKSEEFLSSSKPLIYRYIHAAAFSTSVEQDYYQVLGISKNATQDEIKKAFLLLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAQYDKMKMQSRGSQNIEYDDDDDDFAERFRNGFHHDFSSSFHTVFSEIFEEEISHSSSSIEVELSLTFSEAARGCTKHVSFDALVPCDYCDGRGYPPRAKAKVCPTCRGLGRVTIPPFTSTCVTCKGSGRVIKDFCTSCRGSGVVEGIKEVTVTIPAGVDTGDTIHVPEAGNALKRGARPGSLYIKIKVAEDSVFVRDGADIYVDSNISFTQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272726g00004 353 Gene3D - 200 329 - -
Stsc272726g00004 353 Gene3D DnaJ domain 79 199 IPR036869 -
Stsc272726g00004 353 SUPERFAMILY Chaperone J-domain 82 178 IPR036869 -
Stsc272726g00004 353 CDD DnaJ_C 285 353 - -
Stsc272726g00004 353 SMART dnaj_3 82 140 IPR001623 -
Stsc272726g00004 353 FunFam Molecular chaperone DnaJ 220 288 - -
Stsc272726g00004 353 Pfam DnaJ central domain 228 284 IPR001305 GO:0031072|GO:0051082
Stsc272726g00004 353 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Stsc272726g00004 353 ProSiteProfiles dnaJ domain profile. 83 148 IPR001623 -
Stsc272726g00004 353 CDD DnaJ_zf 228 284 IPR001305 GO:0031072|GO:0051082
Stsc272726g00004 353 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 57 353 - -
Stsc272726g00004 353 SUPERFAMILY HSP40/DnaJ peptide-binding domain 198 344 IPR008971 GO:0006457|GO:0051082
Stsc272726g00004 353 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 215 286 IPR036410 -
Stsc272726g00004 353 Pfam DnaJ C terminal domain 201 353 IPR002939 -
Stsc272726g00004 353 PRINTS DnaJ domain signature 140 159 IPR001623 -
Stsc272726g00004 353 PRINTS DnaJ domain signature 85 103 IPR001623 -
Stsc272726g00004 353 PRINTS DnaJ domain signature 103 118 IPR001623 -
Stsc272726g00004 353 PRINTS DnaJ domain signature 120 140 IPR001623 -
Stsc272726g00004 353 Pfam DnaJ domain 83 145 IPR001623 -
Stsc272726g00004 353 Gene3D - 258 291 - -
Stsc272726g00004 353 Gene3D - 224 257 - -
Stsc272726g00004 353 ProSiteProfiles Zinc finger CR-type profile. 215 289 IPR001305 GO:0031072|GO:0051082
Stsc272726g00004 353 CDD DnaJ 83 137 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272726g00004 Stsc-Chr272726 19515 24269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272726g00004 74 150 C2H2 Transcription Factor Family AT1G74250 40.244 2.23e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272726g00004 - - aip:107622493 630.943