Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc272724g00004 | ATGAGAACTCAACGCCCTCACCTTCTCTTCCTCCTCTCCCTCCTCTTCTTCACAACCACATTCTCCAATCTACATCCCAAGGTCTTCGCCGTTTACGACATCGAATCTCCCGCCGCACCCGCAGTCGACGACGGCGATGCCACCTTCATCCGAACCAGCTGCAACGGCACTCTCTACCCGGACGTCTGCTACACCTCCCTCTCTCGCTACGCCAATGCGGTCCAGCAGGATCCCGGCCAGCTTGCGCGCGTCGCCATCGCCGTCACACTCTCCAAGGTCCACCGCACCGCCTCCTACGTCTCCAACCTCACTCGCGACGCCGATTACACCGTCGACACGCGCGCAACCTCCGCGCTCCATGACTGTTTCACGAATCTCGATGACGCCGTCGACGAAATCCGCGGCTCGCTGAAGCAGATGCGGCAAATTGGAGCCGCCGGAACCGGCGCGGAGTCGTTCCTGTTCCAGATGAGCAACGTGCAGACGTGGATGAGCGCGGCACTCACCGACGAAGAGACATGTACGGACGGATTCCAGGATGTGGCGGACTGTCCGGTGAAGGCGGAGGTGTGCGACCGCGTCACGAAGGTGAAGCAGTTCACGAGCAACGCTTTGGCTCTCGTCAATGGCTACGCTAACAAGGGAGCGCCGTAA | 654 | 0.607 | MRTQRPHLLFLLSLLFFTTTFSNLHPKVFAVYDIESPAAPAVDDGDATFIRTSCNGTLYPDVCYTSLSRYANAVQQDPGQLARVAIAVTLSKVHRTASYVSNLTRDADYTVDTRATSALHDCFTNLDDAVDEIRGSLKQMRQIGAAGTGAESFLFQMSNVQTWMSAALTDEETCTDGFQDVADCPVKAEVCDRVTKVKQFTSNALALVNGYANKGAP | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc272724g00004 | 217 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 45 | 211 | IPR035513 | - | |
| Stsc272724g00004 | 217 | SMART | PMEI_2 | 45 | 207 | IPR006501 | GO:0004857 | |
| Stsc272724g00004 | 217 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 49 | 209 | IPR035513 | - | |
| Stsc272724g00004 | 217 | FunFam | Pectin methylesterase inhibitor 1 | 45 | 211 | - | - | |
| Stsc272724g00004 | 217 | Pfam | Plant invertase/pectin methylesterase inhibitor | 49 | 207 | IPR006501 | GO:0004857 | |
| Stsc272724g00004 | 217 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 9 | 207 | - | - | |
| Stsc272724g00004 | 217 | CDD | PMEI-like_3 | 52 | 213 | - | - | |
| Stsc272724g00004 | 217 | NCBIfam | pectinesterase inhibitor domain | 8 | 211 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc272724g00004 | Stsc-Chr272724 | 15235 | 16216 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc272724g00004 | 2 | 210 | Carbohydrate Esterase | AT5G53370 | 27.830 | 2.37e-16 | 75.5 |