Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272719g00002 ATGGCACCTAATCCCAGAGTTACCAATGCCTATAATGCTATGAGGACCTTAGGCATTTCTGATGATGAGCTGAGGCCTATCTTGAAAAGGTTGCTCAAAGAGTATGGTAATAATTGGGACATTATTGAAGAAGACAATTATGAAATACTGCTAGATGCATACTTTCAGTCCTTGGAACATAAGCAAGAAGAAGAAGATAAAGGGAAAGCTCCAATTAGCAATCATGAGGAAGAAAGAGTTATACCAAAACTGAATTCGGTAAATGGCGATGACATGGTCTCATTGACCGATAACCAAGTTCAAGTGCTGTCTATACAAGACAATGAAATATTTCCAAACACTTCTGAAATGAAAATGATTAAGCCATCTCCATCCTTACATCTTGGACCTGTTTCATCACATTTAAAAGGTCCATGCCATGATTTAAATGTAAATCGTCGTTTCAAATCTATATCAGCTCTCTACCAAAATAAGACAAGTTCCAATCGTGCCAATTTGTCGAATATGACACAACCAGCTATTTGTCATGATGAAAATAATTATGTTCAATTTTTAAATGACATAACAAAAGGATCTGAAAAAGTAGAAATTTCACTCATAGATGAAACTAGAAGTGAGAAGTTGCCAAAGTTTAATTACATACCAAATAACATAATCTACCAGAATGCTAATGTGAACATTTCACTTGCTCGCATTGCGGAAGAGGATTGTTGTTGGGATTGTTCAGGCAACTGCCTTTCTTTGGAATTTCCTTGTGCATGTGCAAAAGAGACAGGTGGGGAGTTTGCTTATACTCCACAAGGCTTGTTGAAAAAAGAGTTCTTAAGACTCTGTATGTTTATGGCAACAAAACCTCAAGAAAATCATTTTGTGTATTGTCAAGAATGCCCGCTAGAAAGGTCTAGGAATGAGTACATGGCTGAAGAATGCAAAGGGCATTTGGTTAGAAAGTTTATAAAAGAATGTTGGAGAAAGTGTGGATGTGATATGCAATGTGGAAATCGTGTAGTGCAGAGGGGCATAAGTTGTAAACTACAGGTATTCTTTACTTGGGAAGGAAAAGGATGGGGTGTTAGAACACTAGAAGATTTGCCCAAAGGCTGCTTTGTTTGTGAGTATGTCGGAGAAATATTAACCAATACAGAATTATATGAAAGGGTTTTACAGAGTAGCAATAAGGATAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCAGAAAAGGTATTAAACGATGAAGAGGCTTTGTGCTTAGATGCAACATATAATGGAAATATTGCAAGATTTATCAATCATAGATGTTCTGATGCTAATTTGATTGACATTCCCGTGGAAGTGGAGGTTCCTGATCGCCACTATTATCATATTGCTCTCTTTACTAATAGGAAAGTAAAAGCGTACGAAGAGCTGACATGGGATTATGGTATTGACTTTGATGATCATGAACATCCTATTAAAGCATTTCAATGCTGCTGTGGAAGTAACTTATGCCGTGACAAGAAAAATAGATCAGGAACTGGATTGAAAGCAAATGACAAAAGCTAA 1551 0.3688 MAPNPRVTNAYNAMRTLGISDDELRPILKRLLKEYGNNWDIIEEDNYEILLDAYFQSLEHKQEEEDKGKAPISNHEEERVIPKLNSVNGDDMVSLTDNQVQVLSIQDNEIFPNTSEMKMIKPSPSLHLGPVSSHLKGPCHDLNVNRRFKSISALYQNKTSSNRANLSNMTQPAICHDENNYVQFLNDITKGSEKVEISLIDETRSEKLPKFNYIPNNIIYQNANVNISLARIAEEDCCWDCSGNCLSLEFPCACAKETGGEFAYTPQGLLKKEFLRLCMFMATKPQENHFVYCQECPLERSRNEYMAEECKGHLVRKFIKECWRKCGCDMQCGNRVVQRGISCKLQVFFTWEGKGWGVRTLEDLPKGCFVCEYVGEILTNTELYERVLQSSNKDRHTYPVTLDADWGSEKVLNDEEALCLDATYNGNIARFINHRCSDANLIDIPVEVEVPDRHYYHIALFTNRKVKAYEELTWDYGIDFDDHEHPIKAFQCCCGSNLCRDKKNRSGTGLKANDKS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272719g00002 516 ProSiteProfiles SET domain profile. 343 477 IPR001214 GO:0005515
Stsc272719g00002 516 SMART preset_2 185 327 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272719g00002 516 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 112 506 - -
Stsc272719g00002 516 SMART set_7 343 483 IPR001214 GO:0005515
Stsc272719g00002 516 Pfam Ubiquitin-binding WIYLD domain 6 58 IPR018848 -
Stsc272719g00002 516 ProSiteProfiles Pre-SET domain profile. 241 340 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272719g00002 516 CDD SET_SETDB-like 209 477 - -
Stsc272719g00002 516 Gene3D - 1 60 IPR043017 -
Stsc272719g00002 516 Pfam Pre-SET motif 188 335 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272719g00002 516 SUPERFAMILY SET domain 195 500 IPR046341 -
Stsc272719g00002 516 Gene3D SET domain 188 502 IPR046341 -
Stsc272719g00002 516 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 516 IPR025776 -
Stsc272719g00002 516 FunFam SET-domain containing protein lysine methyltransferase family protein 188 502 - -
Stsc272719g00002 516 Pfam SET domain 355 477 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272719g00002 Stsc-Chr272719 10887 15985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272719g00002 319 500 C2H2 Transcription Factor Family AT2G23740 42.246 8.33e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc272719g00002 Pre-SET 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272719g00002 - - aip:107615621 655.981