Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272717g00002 ATGAGCAGCAACAAGAAGGTAGCAGGAGGAGGAGGAAGAGGAGCACCACCGCCTCCGAAGGCGGTGGCTCGAACGTGCGTGGGGAAGTATGAGCTTGGAAAGACTATTGGAGAAGGAAGCTTCGCGAAGGTTAAGTTCGCGAAGAACGTTGAGAATGGAAACCATGTTGCCATCAAAATCCTTGACAAGTCTCATGTCCTCAAACACAAGATGATAGAACAGCTGAAGAAGGAAATCTCGGCGATGAAACTGATCAAACATCCAAATGTTGTGAGAATGTTTGAGGTGATGGCAAGCAAAACAAAGATATACATTGTTCTAGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATTGCCAGATATGGAAGACTAAAAGAGGATGAAGCAAGAAGTTATTTTCAACAACTAATCAATGCAGTTGATTATTGCCATAGTAGAGGAGTTTATCATAGAGATTTGAAGCCCGAGAATCTTCTTTTGGACTCAAACGGTGTTCTTAAAGTTTCGGATTTTGGATTGAGTACTTACGCGCAAAGAGTGATCAATGATAGAGGCTATGTTGGATCTGCATCTGATATATGGTCTTGTGGAGTCATTCTCTTTGTCCTCATGGCTGGATACTTGCCTTTTGATGAACCAAATCAAATGACACTTTACAAGAAAATTGAAAAGGCTCAATTCACATGTCCATCATGGTTTTCGCCCCAGGCGAAGAAACTTCTGAAGCGAATTCTAGATCCAAATCCTCTCACAAGGATAAAGATTCCGGAGCTCTTGAAAGATGAATGGTTTAGAAAAGGATACAAGCCACCAAGTTTTACAGAGGAAGAAGATGTAAATGTAGATGATGTAGCTGCTGCTTTTGATGATTCTAAGGAAAATCTAGTGACAGAGAGAAAAGAGAAACCGGTTTCAATGAATGCTTTTGAACTCATTTCAAGATCACAAAGCTTTAACCTTGATAGCTTGTTTGAGCAGCAAACGGGAATTGTAAAGAGAGAAACACATTTTGCTTCGCAACATCCTCCAAACGAAATCATGTCGAAAATTGAGGAAGCTGCCAAGCCTCTAGGATTCAATGTTCGCAAGCGAGATTACAAGATGAAGTTGCAAGGTGATAAGAGTGGAAGGAAAGGTCACCTTTCGGTAGCTACCGAGGTTTTCGAAGTGGCGCCCTCCTTGCACATGGTGGAGCTGCGAAAAACCGGTGGCGATACACTGGAGTTTCACAAGTTCTACAAAAACTTCTCTTCAGGGTTGCAAGACATAGTTTGGCATACTGAAGAAAAAGTTTGA 1299 0.4165 MSSNKKVAGGGGRGAPPPPKAVARTCVGKYELGKTIGEGSFAKVKFAKNVENGNHVAIKILDKSHVLKHKMIEQLKKEISAMKLIKHPNVVRMFEVMASKTKIYIVLELVNGGELFDKIARYGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNGVLKVSDFGLSTYAQRVINDRGYVGSASDIWSCGVILFVLMAGYLPFDEPNQMTLYKKIEKAQFTCPSWFSPQAKKLLKRILDPNPLTRIKIPELLKDEWFRKGYKPPSFTEEEDVNVDDVAAAFDDSKENLVTERKEKPVSMNAFELISRSQSFNLDSLFEQQTGIVKRETHFASQHPPNEIMSKIEEAAKPLGFNVRKRDYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKNFSSGLQDIVWHTEEKV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272717g00002 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 27 412 - -
Stsc272717g00002 432 MobiDBLite consensus disorder prediction 1 20 - -
Stsc272717g00002 432 Gene3D Transferase(Phosphotransferase) domain 1 110 301 - -
Stsc272717g00002 432 SMART serkin_6 30 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272717g00002 432 Gene3D Phosphorylase Kinase; domain 1 20 109 - -
Stsc272717g00002 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Stsc272717g00002 432 Gene3D Kinase associated domain 1, KA1 302 427 - -
Stsc272717g00002 432 ProSiteProfiles Protein kinase domain profile. 30 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272717g00002 432 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Stsc272717g00002 432 FunFam Non-specific serine/threonine protein kinase 21 109 - -
Stsc272717g00002 432 Pfam Protein kinase domain 30 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272717g00002 432 FunFam Non-specific serine/threonine protein kinase 301 427 - -
Stsc272717g00002 432 FunFam Maternal embryonic leucine zipper kinase 24 180 - -
Stsc272717g00002 432 Pfam NAF domain 304 364 IPR004041 GO:0007165
Stsc272717g00002 432 CDD CIPK_C 308 421 - -
Stsc272717g00002 432 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Stsc272717g00002 432 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272717g00002 Stsc-Chr272717 12117 15880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272717g00002 10 429 CBL-interacting serine-threonine protein kinases AT1G01140 70.112 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Stsc272717g00002 Pkinase 1.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272717g00002 - - gmx:100794136 721.079