Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272707g00001 ATGATCTCTAACAACGAAGACCGTCCCGCCACCGCCGCCGCTACCGCCGCCGCTGCCGGAGGAGCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATTTCAAATGATGATCGGCCCGCACCGCCGGCAGCACCCAACATTGTGATGTCGTCGAAGGATCACGATTCTCTCTTCAGCGGTGGTGGCATCAGCTTTCTCTCTGGAAGTCGAAGCGGAAGATTTAGTTATGGATATTCCAGTTTCAAGGGTAAAAGGTCTTCAATGGAGGATTTTTTTGAGACCAAGATATCCGAGGTTGATGGTCAGACTGTTGCCTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCCGAACTGCAGAATACCTGAAAAATAATCTGTTTAAGAATCTAAGTAGCCATCCTGACTTTATCAAAGACACAAAGACTGCTATTGTTGAAGCATTTAAACAGACAGATGTTGATTACCTCAATGAGGAAAAGGGCCATCAGAGGGATGCTGGATCCACTGCATCAACAGCTATGTTGTTGGGGGACCGAATTCTTGTTGCAAATGTTGGCGATTCCAGAGTAGTTGCATGCAGAGCTGGTACAGCGGTCCCTTTGTCTATCGATCACAAACCTGATAGATCTGACGAGCGTCAAAGGATTGAGCAGGCAGGGGGATTCATAATTTGGGCAGGGACGTGGAGGGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAGATAAACTTCTTAAACCATACGTTGTTGCCGACCCAGAAATTAAGGAAGAAGAAATAGATGGTGTGGATTTTATCATAATCGCCAGTGATGGTCTTTGGAATGTCATATCAAACAAGGAGGCGGTGTCTTTAGTACAAAATATCACAGATGCAGAAGTGGCGTCCAGAGAACTCATTAAAGAGGCTTATGCACGAGGAAGCTCAGACAACATTACTTGCGTCGTTGTTCGATTTGATCTCTCCTGA 996 0.4558 MISNNEDRPATAAATAAAAGGAASSSSSSSSSSSSSSSSSISNDDRPAPPAAPNIVMSSKDHDSLFSGGGISFLSGSRSGRFSYGYSSFKGKRSSMEDFFETKISEVDGQTVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTAMLLGDRILVANVGDSRVVACRAGTAVPLSIDHKPDRSDERQRIEQAGGFIIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIKEEEIDGVDFIIIASDGLWNVISNKEAVSLVQNITDAEVASRELIKEAYARGSSDNITCVVVRFDLS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272707g00001 331 SMART PP2C_4 72 326 IPR001932 -
Stsc272707g00001 331 FunFam probable protein phosphatase 2C 59 75 331 - -
Stsc272707g00001 331 Gene3D - 77 330 IPR036457 -
Stsc272707g00001 331 MobiDBLite consensus disorder prediction 1 59 - -
Stsc272707g00001 331 CDD PP2Cc 82 328 IPR001932 -
Stsc272707g00001 331 MobiDBLite consensus disorder prediction 20 45 - -
Stsc272707g00001 331 SUPERFAMILY PP2C-like 77 329 IPR036457 -
Stsc272707g00001 331 PANTHER PROTEIN PHOSPHATASE 37 328 IPR015655 GO:0004722|GO:0006470
Stsc272707g00001 331 Pfam Protein phosphatase 2C 84 321 IPR001932 -
Stsc272707g00001 331 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169
Stsc272707g00001 331 ProSiteProfiles PPM-type phosphatase domain profile. 83 328 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272707g00001 Stsc-Chr272707 90 4582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272707g00001 55 331 PP2C-type Phosphatase Gene Family AT1G43900 73.285 1.68e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272707g00001 K17506 - gmx:100776867 513.842