Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272698g00004 ATGGACGGTGGCGCGTGGGCTTCACTCTCCAAGGAACCTTCCGAGGAAGAGTTCTGCCTCTCACTTCGCAACGGTCTCATTCTCTGCAACGTCCTCAACAAGGTCAACCCCGGCGCCGTCCTCAAGGTGGTGGAGAATCCCACTCCTGCTGTTCAATCTGCAGAGGGAGCTGCACAATCTGCAATTCAGTACTTTGAGAATATGAGGAACTTTCTGGAAGCTGTTAAGGACATGCAGCTTTTGACATTTGAAGCTTCAGATTTGGAAAAGGGAGGTTCATCAAGTAAAGTTGTGGACTGCATTCTGTGTTTGAAGGGATACTATGAATGGAAGCTATCAGGTGGAGTTGGTGTGTGGAGGTATGGAGGAACTGTGAGGATCACTTCCTTTCCGAAAGGTTCTTCGCCTTCGGATGTGGCGAGCAGCGAAAGTTCTTATGAGTCACTGGATGAGTCTGAGTTGTCACAATATGAACAGATGCTAGAGTTTCTCCGGCTATCCGGAGAGGTCGCCGTAGAAGAAACCAAAACTGCTGATGCCTTGGCTTTCATGTTTGATCAGTTTGGACTGAAGCTTCTTCTGGCATACCTTAGAGAGACTGATGGGGTTGAAGATCTTCCATTGAATGCAATGGTAATTGATACTTTGCTCAGAAAATTAGCCAAGGATTTCTCTGCAATGCTTGTTTCTCAAGGCAAACAGCTTGGACTTCTGCTGAAGAGAATACTGAAAAGCGATGTTGGTTGCATCAGTAAGAGAGATTTTGTAGAAGCTATCACATTATATCTTAATCAAAGAAGTAGTTTGGCATCAGATGATTTGTCCAAATTCTGCATTTTTGGAGGAAAACCTGATAATACAACACATAATAATAGTCATTGTTCAAAACATGTGGAAATAATTGATGTTCAGCAGAAAGAACTTGAGAGGATGAAATGCTTCCTTGATGAGCTAAAAATGGAGGTCAAACAAATTCAATCTGAGTGGGAGAAAGAACTGAGCAGGCTAGAGAATCATATTAAGAGTCTTGAAGTGACTTCTACATCCTACCACAAAGTTTTGGAGGAGAACCGCATTCTATATAACCAAGTACAAGACCTCAAAGGAGCCATAAGGGTCTATTGTAGAGTGAAGCCTTTCTCGCCAGGACAGTCAAATGTGCAATCTACAGTGGACTATATAGGAGAAGATGGAAATATAATGATAGTAAATCCTCAAAAGCAAGGAAAAGATGCAAGAAAGGTGTTTTCATTCAATAAGGTGTTTCCAACAAATGTCACACAAGAACAAATTTACGCCGACACTCTACCACTGGTCAGGTCCGTTCTAGATGGCTACAATGTATGCATCTTTGCATATGGACAGACCGGTTCGGGAAAGACCTACACTATGAGTGGCCCTGATCTGATGTCTGAAGAGACATGGGGTGTAAACTATAGGGCTTTGCGCGACTTGTTTCATATATCAAAGGAAAGGGCAGACGCCATAAAATATGAAGTTGGTGTCCAGATGATTGAAATATACAATGAGCAAGTTCGAGATTTATTAGTCAGTGATGGCTCTAACAGAAGATATCCTTCTTTCAAGCACATATTTTCTTTGTTTAGATATCTTCATCCTTAA 1623 0.4214 MDGGAWASLSKEPSEEEFCLSLRNGLILCNVLNKVNPGAVLKVVENPTPAVQSAEGAAQSAIQYFENMRNFLEAVKDMQLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKGSSPSDVASSESSYESLDESELSQYEQMLEFLRLSGEVAVEETKTADALAFMFDQFGLKLLLAYLRETDGVEDLPLNAMVIDTLLRKLAKDFSAMLVSQGKQLGLLLKRILKSDVGCISKRDFVEAITLYLNQRSSLASDDLSKFCIFGGKPDNTTHNNSHCSKHVEIIDVQQKELERMKCFLDELKMEVKQIQSEWEKELSRLENHIKSLEVTSTSYHKVLEENRILYNQVQDLKGAIRVYCRVKPFSPGQSNVQSTVDYIGEDGNIMIVNPQKQGKDARKVFSFNKVFPTNVTQEQIYADTLPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLMSEETWGVNYRALRDLFHISKERADAIKYEVGVQMIEIYNEQVRDLLVSDGSNRRYPSFKHIFSLFRYLHP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272698g00004 540 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 312 525 - -
Stsc272698g00004 540 FunFam kinesin-like protein KIN-14F 1 109 - -
Stsc272698g00004 540 SUPERFAMILY Calponin-homology domain, CH-domain 12 129 IPR036872 -
Stsc272698g00004 540 Gene3D - 5 109 IPR036872 -
Stsc272698g00004 540 CDD CH_AtKIN14-like 7 105 - -
Stsc272698g00004 540 PANTHER KINESIN-LIKE PROTEIN KLP-3 12 527 IPR027640 GO:0003777|GO:0007018
Stsc272698g00004 540 Pfam Microtubule binding 356 516 IPR031852 GO:0008017
Stsc272698g00004 540 Coils Coil 301 346 - -
Stsc272698g00004 540 Pfam Calponin homology (CH) domain 15 109 IPR001715 GO:0005515
Stsc272698g00004 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 524 IPR027417 -
Stsc272698g00004 540 Gene3D Kinesin motor domain 312 530 IPR036961 -
Stsc272698g00004 540 ProSiteProfiles Kinesin motor domain profile. 370 540 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272698g00004 540 SMART kinesin_4 368 540 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272698g00004 540 ProSiteProfiles Calponin homology (CH) domain profile. 1 109 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272698g00004 Stsc-Chr272698 16905 19865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272698g00004 306 523 Calmodulin-binding Proteins AT5G65930 34.529 6.54e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272698g00004 K10406 - gmx:100786466 815.068