Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272698g00001 ATGTCTAGAAGAAGCTTATTATTATTATTATCAAGGAACCTCTCATCACTTTCTTCCAAAATCATCTATTCCATAACATTGATTCTCTCAATAAACTCTCTTTTCTTCTTCCCATCTTGTCACTCTCTTGATGAACAAGGCAAGGCCCTTCTGGCATGGAAGAAAAGCTTGAATGGCAGTTCTAATGATGCAGCATTGTTGGCATCTTGGAACCCTTCAAACCAAACACCATGCAATAACTGGTTTGGTGTGAAATGCAACTCAGAAAATGAAGTCATAGAGATAAACTTGAACTCAGTGAACTTGCTTGGTTCTTCATTGCCTTCAAATCTTCAACCTCTTAAGTCCTTGAAGATTCTTGCTCTCTCATCAACCAACATCAGTGGAAGGATTCCAACAGAATTTGGAGACTATCAAGAACTCATTTCAATTGATCTCAGTGGGAATTCTCTCTCTGGTGAAATACCAGAAGAGATTTGCAAGCTGAGAAAGCTAGAGAGTTTGGAACTCCATGATAACTCTCTTGAAGGGAAAATTCCATTCAGCATTGGGAATTTGTCAAACCTTGTGAACTTGACACTCTTTGATAACAAACTGAGTGGTGAAGTTCCAAAGAGCATTGGATTTTTGAGGAATCTTCAAGTGTTCAGGGCTGGAGGGAACAAAAATCTCAAGGGAGAGCTTCCATTTGAGATTGGAAACTGCACTAACTTGATCATGTTGGGCCTCGCCGAGACCGGAATTTCCGGCAGCATTCCTTCATCAATAGGGATGCTGAGAAGGCTTCAAACCATTGCAATTTACACAACACTATTGTCAGGTTCTATTCCTGAAGAGATTGTAAATTGCAGTGAGTTGCAGAATGTTTATCTGTACCAGAACTCAATTTCTGGTTCAATTCCACCTCAAATTGGAAAACTCAGCAAGCTTCAGAATCTGTTCTTGTGGCAGAACAATTTAGTTGGAACAATTCCTGAAAGTCTTGGAAGCTGCACAGAACTCAATGCTGTGGATTTGTCACAGAATCTTCTCACAGGTAGCATACCAAAGAGTTTTGGAAAGCTATCAAATCTTCAAGTTCTTCAACTCAGTGTTAACCAGATTTCAGGTACTATACCTGATGAAATCTCAAACTGCACTTGTCTGAATCAGATTGAGGTTGACAACAATGCTATCTCTGGTGAGATTCCTTCTCTTATTGGTAAATTGAGAAGCTTGACTCTGTTCTTTGCATGGAAGAACAAGCTGACTGGAAGAATTCCAGATAGTCTTTCAGATTGCAAAGATCTTCAGGAGCTTGATCTTTCATACAACAGCTTGATTGGTTCGATACCGAAACGACTATTCGGATTAAAGAACCTCTCAAAGCTGCTGCTAATTTCCAATGAATTCTCAGGCCTTATTCCACCTGATATTGGTAACTGCACAAGTTTATACAGGTTGAGGTTGAATCAGAACAAATTCTCAGGTACTATTCCATCTGAGATTATCAGCTTGAAGAATCTGAACTTTCTTGATCTTGGAAGCAACCATCTTGTAGGGGAGATTCCTCAAGAACTTCACAGATGCCGAAAACTCGAGTTTCTTGACCTTCACTCCAATGGTCTCACAGGTTCAGTTCCATATATGCTTCCAAGAAGCCTTCAATTCATTGATTTCTCAGATAATAGGCTAGAAGGTGAACTAAACCATTCCATTGGTTCACTAACTGAATTGACAAAACTCAACTTGGGAAAGAATCATCTCAGTGGAAGAATCCCTTCAGAGATTGCTTCTTGTTCTAAGCTGCAGCTTCTAGACTTGGGAGGCAATGCCTTTTCAGGTGAAATTCCAAAGGAAGTTGGTCAAATTCCTTCGCTCGAAATCGCCCTCAATCTCAGCTATAACCAGTTTTATGGTGAAATTCCAGCAGAATTCTCTGGCCTTAGCAAACTTGGAGCGCTTGATCTTTCACACAACAAGCTCTCAGGGAAATTAGATGCTCTTGCTGAGCTTCAAAATCTTGTTTCCTTGAATGTTTCCTTCAATCACTTCTCTGGTGAATTGCCAAACACTCCATTCTTCAGGGAGATTCCAATCAGTGATATCACTTCAAATGATGGTCTCTTCATTGCTGGTGCTGCTGCTACACACAAAGTTCATGCAAGATTAGCTATGAAGATCATAATGTGCATTCTCTTGATCACAAGTGCAGCAGTAGCACTAATCACACTCCATTTCTTGATTCGCGCTTATATCACCAACAAATCACTCATGAAAAGTGAAAACTGGGAGATAAATTTGTATCAGAAGTCTGAACTCTCATTCTCCGTTGATGACATTGTCAATAATCTGATATCAGCCAATGTGATTGGAACTGGAAGCTCCGGTGTCGTGTACAAGGTAGAAACTGGAAATGGAAAAACACTAGCAGTTAAGAAGATGTGGACATCATCATCATCAGAGTCCAATGGAGGATTCAGTTCAGAAATTAAGACACTAGGTTCAATCAGACACAAGAACATCATCAAGCTTCTTGGTTCTGGATCCAACAAGAACAAGAGCATGAATCTGCTGTTTTATGAGTACCTCCCTAATGGAAGCCTGAGTTCATTGCTTCATGGTTCAGGAAAAGGAAACTCAGAATGGGAAACCAGATATGATATTGTGTTAGGATTGGCTCATGCACTTGCATATTTGCACCATGATTGTGTGCCTCCTATAATTCATGGAGATGTGAAATCCATGAATGTGTTACTAGGCCATGGCTATCATCCTTACCTTGCTGACTTTGGTCATGCAAGAATTGTAGCTGAAAATGCTGATGCTGACACTCAAAGACCCTACCTTGCTGGTTCCTATGGATACATGGCTCCAGAGCATGCATTGATGCAATCTATCACTGAGAAAAGTGATGTTTACAGTTTTGGTGTGGTCTTACTTGAGGTCCTCACAGGAAGGCACCCTTTGGATCCAACTCTTGCTGAGGGTGCAAACTTGGTTAACTGGGTCAAGAACCACTTGGCTAACAAAGGAGAACCATTTGAGATCATTGACACAAAGCTTAGAGGGAGAAGAAATGACCCTACAATGCAGAACCATGAGATTCTTCAAACTTTGGCTGTGTCATTTTTATGTGTCAGCAACAGTCCTGATGAACGTCCTACAATGAAGGACACTGTTGCAATGCTCAAGGAAATTAGACCCTTTGGTGAAGCCTCAACACTTTAG 3210 0.4062 MSRRSLLLLLSRNLSSLSSKIIYSITLILSINSLFFFPSCHSLDEQGKALLAWKKSLNGSSNDAALLASWNPSNQTPCNNWFGVKCNSENEVIEINLNSVNLLGSSLPSNLQPLKSLKILALSSTNISGRIPTEFGDYQELISIDLSGNSLSGEIPEEICKLRKLESLELHDNSLEGKIPFSIGNLSNLVNLTLFDNKLSGEVPKSIGFLRNLQVFRAGGNKNLKGELPFEIGNCTNLIMLGLAETGISGSIPSSIGMLRRLQTIAIYTTLLSGSIPEEIVNCSELQNVYLYQNSISGSIPPQIGKLSKLQNLFLWQNNLVGTIPESLGSCTELNAVDLSQNLLTGSIPKSFGKLSNLQVLQLSVNQISGTIPDEISNCTCLNQIEVDNNAISGEIPSLIGKLRSLTLFFAWKNKLTGRIPDSLSDCKDLQELDLSYNSLIGSIPKRLFGLKNLSKLLLISNEFSGLIPPDIGNCTSLYRLRLNQNKFSGTIPSEIISLKNLNFLDLGSNHLVGEIPQELHRCRKLEFLDLHSNGLTGSVPYMLPRSLQFIDFSDNRLEGELNHSIGSLTELTKLNLGKNHLSGRIPSEIASCSKLQLLDLGGNAFSGEIPKEVGQIPSLEIALNLSYNQFYGEIPAEFSGLSKLGALDLSHNKLSGKLDALAELQNLVSLNVSFNHFSGELPNTPFFREIPISDITSNDGLFIAGAAATHKVHARLAMKIIMCILLITSAAVALITLHFLIRAYITNKSLMKSENWEINLYQKSELSFSVDDIVNNLISANVIGTGSSGVVYKVETGNGKTLAVKKMWTSSSSESNGGFSSEIKTLGSIRHKNIIKLLGSGSNKNKSMNLLFYEYLPNGSLSSLLHGSGKGNSEWETRYDIVLGLAHALAYLHHDCVPPIIHGDVKSMNVLLGHGYHPYLADFGHARIVAENADADTQRPYLAGSYGYMAPEHALMQSITEKSDVYSFGVVLLEVLTGRHPLDPTLAEGANLVNWVKNHLANKGEPFEIIDTKLRGRRNDPTMQNHEILQTLAVSFLCVSNSPDERPTMKDTVAMLKEIRPFGEASTL 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272698g00001 1069 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Stsc272698g00001 1069 Gene3D Ribonuclease Inhibitor 43 209 IPR032675 -
Stsc272698g00001 1069 Gene3D Ribonuclease Inhibitor 452 712 IPR032675 -
Stsc272698g00001 1069 Gene3D Ribonuclease Inhibitor 283 451 IPR032675 -
Stsc272698g00001 1069 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 857 1068 - -
Stsc272698g00001 1069 SUPERFAMILY RNI-like 94 417 - -
Stsc272698g00001 1069 ProSiteProfiles Protein kinase domain profile. 778 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272698g00001 1069 SUPERFAMILY RNI-like 318 679 - -
Stsc272698g00001 1069 SMART LRR_typ_2 642 665 IPR003591 -
Stsc272698g00001 1069 SMART LRR_typ_2 569 593 IPR003591 -
Stsc272698g00001 1069 SMART LRR_typ_2 162 186 IPR003591 -
Stsc272698g00001 1069 SMART LRR_typ_2 499 523 IPR003591 -
Stsc272698g00001 1069 SMART LRR_typ_2 355 379 IPR003591 -
Stsc272698g00001 1069 SMART LRR_typ_2 427 451 IPR003591 -
Stsc272698g00001 1069 SMART LRR_typ_2 307 331 IPR003591 -
Stsc272698g00001 1069 Pfam Leucine rich repeat N-terminal domain 44 87 IPR013210 -
Stsc272698g00001 1069 ProSitePatterns Protein kinases ATP-binding region signature. 784 807 IPR017441 GO:0005524
Stsc272698g00001 1069 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 547 1058 - -
Stsc272698g00001 1069 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515
Stsc272698g00001 1069 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Stsc272698g00001 1069 FunFam Putative LRR receptor-like serine/threonine-protein kinase 623 708 - -
Stsc272698g00001 1069 Gene3D Ribonuclease Inhibitor 211 282 IPR032675 -
Stsc272698g00001 1069 PRINTS Leucine-rich repeat signature 642 655 - -
Stsc272698g00001 1069 PRINTS Leucine-rich repeat signature 430 443 - -
Stsc272698g00001 1069 FunFam Leucine-rich receptor-like protein kinase family protein 350 622 - -
Stsc272698g00001 1069 FunFam Predicted protein 206 302 - -
Stsc272698g00001 1069 Gene3D Transferase(Phosphotransferase) domain 1 857 1066 - -
Stsc272698g00001 1069 SUPERFAMILY Protein kinase-like (PK-like) 768 1057 IPR011009 -
Stsc272698g00001 1069 SMART serkin_6 778 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272698g00001 1069 FunFam Leucine-rich receptor-like protein kinase family protein 43 205 - -
Stsc272698g00001 1069 Pfam Protein kinase domain 782 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272698g00001 1069 ProSiteProfiles Leucine-rich repeat profile. 644 666 IPR001611 GO:0005515
Stsc272698g00001 1069 Gene3D Phosphorylase Kinase; domain 1 743 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272698g00001 Stsc-Chr272698 4651 8156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272698g00001 40 1063 Receptor kinase-like Gene Family AT5G56040 63.408 0.0 1274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272698g00001 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272698g00001 - - gmx:100813139 1459.89