Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272694g00002 ATGTCAACCAGCAAAGAAATGGAAGGCTTATGTGATGAGGGATCCCATATAGAAAGACAGATTTTTACCGAGGTCTTTTCCAGTGATGGCATTTTTCAGTCCAGTCAGAGGTGTCTTGTTTCTGGAGTTATCAACTTTGAATGTGAATCTGCAAAAAACACATTCAAATCATTCTGCTCTAGTAATGAAATTTCAGCTGTATTGCGCTCCTCATCTTCAATATTTAAACATCCCGATGAGGACATTAATGCAATTCAAGATTCCAAAGAGACTGCTTTGGGGTGTGTGCCAAAGAGTTTCACATGTGAAGACGATCAGAATGACGAGGACATGAACGTCAAACGAATGAAGTTCTCTTTACATGAACCTCCTAGTAGTAGATCTGATTCCGAAATTGTTTTGAATCCATCGGAATTTTCGAAAGATATGGTTGCTAACTTATCTCTTGCTGACTGTAATAGTGAACCCATTGCTTTTCGTTTAGTTGAATCATCCACGTGTGGTGTGATATGTAGTAGCTATCTGTTGAAACATAACATGCTACAGAGCAAACCAGCTGCTAAGGGTGATGTAGATGTTACAAAATGTAAATCAGCAACTGGAGACAGTAATGTTGCAAAAGAGGTGGCTGTAGGTAAGGCAGTTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCAAACAGGCTTGTGGTTACAACACCATCAATCGGTGCTGTGTTTCCCTTGCATCCTGAAGAAATGTCAAAAGACTTCATATCTGCTGACATGGATATTTCGGATTCATTATCAAAGCTGGGCAAAAAGGATCCTCGTACTTTACTGCAGTTTCATATTTTGCAGTTGCTTACAGCAGCAGGATGGACTATTGAGAAGCGTAAACGCCCTAGTAGGCGATACATTGAGTCAGTTTATAGGACTCCAGAAGGAAAAACTGTCCGGGAATTTACGAAAGCTTGGAGATTATGTGGTCAGCTTCTGTCTGTTGAAAAATGTAATTTAGCATATGAAGAGTGTAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATTTGTCTGTTGCTCTGATAAATGTTGAAAAAGGAATGAACCAGTTAGAGACTGCTTCTATGTTGGCTTATCGATGTATGGATCTAGTTTCCTCACCTGGTTACAGATTAGATAGCAGTGGTACTCAGCAAAGTCCTTGCTCTTTTGATATTCTTACAAGTTCGGGAAATTCAGTACAGTTGCTTGAAGGGCCTAAAGTAAATGATGTTCTCCAAGCTAAAGTTGGAAATTCCCAAAGGGTTGATGAAGATAATGGGATTGAGAGAGGTGTACTAATGGAAATGTCAGAGGAAAAGAATGCATCTGAAGTAAGCCTTGCCCTGGTTCATTATCATGAATCTGAGACTATTCAACAGTCTAATTATAGTGATGGAGATTGCAGGAGAATCTCAATAGCTTCTGTATCTGAGACAGATAAGACGTCTTCCGCCACCAGTGTTATTCTTAAGAAGAAAATGAGGAGGAGGGGAAAAAGGGTATCTCAGATCAAACTGAGTATGTTGTACCGTAGTGACATGGTGGGGTCAACTGTTACCGAGCAGATGCAGTCACTGAATGGTGGTCCAAGTGGAACTCAATTGGTGTTGGAAGAGGCTCACGATAATCTAGTAGACAATTCAGGAACAAAAAGAAGCTGCAGGAAGTTATCATCTTTCAGTGCATCCCAGCAACATATTAGGAAAACAAACTACTCCCTGAACGGAATGAATAAGTCCAGATGCCAGATTAAAGATGATGATCTGTTGGTCTCAGCAATATTCAAGAACAAGGAGTCTGGCCCCAATACAATACGGGGTAATTCTAGAGCTAAATCCGGCAAATTGAGAGGCCGGAGAAAGCTTAAAAGCCAAAAGGGCCGTTGTCGGTTGCTACCAAGGAATCTTTGCAATGGAGGGAATCACAATAAGGATGGCAAGAGGTATTATTTGGGGTCAAGGACAGTCTTGTCCTGGTTGATTGATAATGGTGTGATATCTATAAATGATGTGATTCAATACCGAAGTCCTAAAGATGATGCTGTCATTAAGGATGGTAGGATTACCAAAGATGGAGTTATGTGCAAGTGTTGTTCCAATGTTTTTACATTATCAGAGTTCAAATTTCATTCTGGTTTTGCACTGAACCGTCCCTGCTTGAATCTTTTCATGGAGTCTGGTGAGCCTTTTACACTCTGCCTCCTTCAAGCTTGGTCTTCTGAGTACAAAGCCAGGAAAAGTCAGAATCAAGCTGTGAAAGTTGATAATGATGACAGAAATGATGACTCATGTGGGCTATGTGGGGAGGGGGGTGAGCTGATTTGTTGTGATAACTGTCCGTCTACTTTTCATCTGACTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCGCAAACTGCACTTGTCGGATATGTGGAAATTTGGTCATGGACAAGGAGGCTTCAGATGTGTATGATTCATTGCAATGTTCACAATGTGAACATAAATATCATGATTCATGCTTGAAAGAAAGAGATAAACAAGAAGGGTTTCTTCCAGATACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTATTCACCGGTCTCCAATCTCAAGTGGGGTTAGTCAATCATGTTTCCAATGGCTTCTCATGGATGCTTCTTAGATGCATCCATGATGATCAAAAGGTTCATTCTGCCCAGTGGTTAGCCCTAAAGGCGGTATGCAATACAAAGTTAGCTGTTGCGCTTACTATCATGGAGGAGTGTTTTTTGTCGATGTTGGATCCAAGAACAGGCATACACATGATACCCCAACTTCTATACAACTGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAGCAGGACGTATTAACGTCTGTAGCATGTATTAGGGTGCATGGAACTACAGTTGCTGAGATGCCTCTCATTGCCACTTGCAGTCGGTTTCGTCGGCAAGGAATGTGCCGACTCCTCGTGAGTGCAATTGAGGAGATGCTAACATCTGTCAAGGTAGAGAAGCTGGTAGTAGCAGCAATTCCAGATTTGGTGGAGACATGGACCAAAGGTTTTGGATTCACACCTATGGATGCCGCTGAAAAGCAGAAGTTGAACAAAATCAACTTAATGGTTTTTCCTGGAACAATGTTACTTGAAAAACCCTTGTACAAGAAGGAACAAACCGAAGGAACATGTTATGCATTGACTATGGCAGCAAATGAACCGACCGAAGTCAATATCAGTTCTGAAGAAATGGCCACGGATAAATCACCACTACAAGATGTTGGAGACATTACAACGGACGAATTGGGTGCTGATAAATCAGAGTCTGAACTTGAATGTAGGAATCACAAAGACACTATTGCTGACAGTGAAACCAGCAGAGATGATAAAACTCAAGCCATCCACCACGACAACACTGCATTTGATGCCAATAATTCAACAGAAACAGGTAACTGTTTTGGAGCAGAGGTCATGCCAGTAATGGTCTCAGACAAGTCTGAGAAATTGTGCAGTGGAGACGGCATGCTCGAACCGAGAACAAGCAATGAAATGCAAACAGTGAGTGAGTTCGGACAGCAATCTAGTGAGGACTGTTATGTAAACAAAGATGTTGCTGAGTCAGGTGTAATAGTTATTGGCAAGGATGTCAAAGTGGGTGAAGTTCAGGAAAATGCAAATGTGCAGGGCAAGTTTTCAAATTTGTCCTGTAAAACATTCGTTGGCAGCAATTTTGACATTGATTCTAGTATTGAACGTTCAGGGTTGTATGATGAAGCTGCTGTTTTTGGAACACTTGCAAAGTCTGCAAGCTGA 3852 0.4161 MSTSKEMEGLCDEGSHIERQIFTEVFSSDGIFQSSQRCLVSGVINFECESAKNTFKSFCSSNEISAVLRSSSSIFKHPDEDINAIQDSKETALGCVPKSFTCEDDQNDEDMNVKRMKFSLHEPPSSRSDSEIVLNPSEFSKDMVANLSLADCNSEPIAFRLVESSTCGVICSSYLLKHNMLQSKPAAKGDVDVTKCKSATGDSNVAKEVAVGKAVASPVSQESFANRLVVTTPSIGAVFPLHPEEMSKDFISADMDISDSLSKLGKKDPRTLLQFHILQLLTAAGWTIEKRKRPSRRYIESVYRTPEGKTVREFTKAWRLCGQLLSVEKCNLAYEECKEWTDISQFWSDLSVALINVEKGMNQLETASMLAYRCMDLVSSPGYRLDSSGTQQSPCSFDILTSSGNSVQLLEGPKVNDVLQAKVGNSQRVDEDNGIERGVLMEMSEEKNASEVSLALVHYHESETIQQSNYSDGDCRRISIASVSETDKTSSATSVILKKKMRRRGKRVSQIKLSMLYRSDMVGSTVTEQMQSLNGGPSGTQLVLEEAHDNLVDNSGTKRSCRKLSSFSASQQHIRKTNYSLNGMNKSRCQIKDDDLLVSAIFKNKESGPNTIRGNSRAKSGKLRGRRKLKSQKGRCRLLPRNLCNGGNHNKDGKRYYLGSRTVLSWLIDNGVISINDVIQYRSPKDDAVIKDGRITKDGVMCKCCSNVFTLSEFKFHSGFALNRPCLNLFMESGEPFTLCLLQAWSSEYKARKSQNQAVKVDNDDRNDDSCGLCGEGGELICCDNCPSTFHLTCLSTQEIPDGNWYCANCTCRICGNLVMDKEASDVYDSLQCSQCEHKYHDSCLKERDKQEGFLPDTWFCGQSCQEVFTGLQSQVGLVNHVSNGFSWMLLRCIHDDQKVHSAQWLALKAVCNTKLAVALTIMEECFLSMLDPRTGIHMIPQLLYNWGSDFARLNFQGFYTVVLEKQDVLTSVACIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSAIEEMLTSVKVEKLVVAAIPDLVETWTKGFGFTPMDAAEKQKLNKINLMVFPGTMLLEKPLYKKEQTEGTCYALTMAANEPTEVNISSEEMATDKSPLQDVGDITTDELGADKSESELECRNHKDTIADSETSRDDKTQAIHHDNTAFDANNSTETGNCFGAEVMPVMVSDKSEKLCSGDGMLEPRTSNEMQTVSEFGQQSSEDCYVNKDVAESGVIVIGKDVKVGEVQENANVQGKFSNLSCKTFVGSNFDIDSSIERSGLYDEAAVFGTLAKSAS 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272694g00002 1283 CDD PHD2_CHD_II 770 810 - -
Stsc272694g00002 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 754 827 IPR013083 -
Stsc272694g00002 1283 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 918 1042 IPR016181 -
Stsc272694g00002 1283 Pfam PHD-finger 771 812 IPR019787 -
Stsc272694g00002 1283 SMART PHD_3 770 811 IPR001965 -
Stsc272694g00002 1283 SMART PHD_3 812 866 IPR001965 -
Stsc272694g00002 1283 SUPERFAMILY FYVE/PHD zinc finger 764 817 IPR011011 -
Stsc272694g00002 1283 Pfam Tify domain binding domain 693 743 IPR032308 -
Stsc272694g00002 1283 ProSiteProfiles Zinc finger PHD-type profile. 768 813 IPR019787 -
Stsc272694g00002 1283 PANTHER PHD FINGER FAMILY PROTEIN 12 1145 - -
Stsc272694g00002 1283 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 906 1068 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272694g00002 Stsc-Chr272694 8713 15526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272694g00002 7 1088 PHD Transcription Factor Family AT3G14980 41.772 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc272694g00002 TDBD 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272694g00002 - - gmx:100777440 1566.21