LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272690g00004	ATGTCTAGCACAAACAGCACTTGTCTCATGGAAGAAAGAGAGCTCTCTGATGCCAACAACACCTATGAACTTATCCCTATTCCTATTCCTCATCACCTCAATGAAGATTGGTATATACCTGACAACAACACTCCTACTACTATCCAAAATCAACAACCTCCGGGTTCAGACTCAGATACAAGGGACATCAACTTCTTTCATCAAGATAACAACACTTTCTTCCATCCATCTTCTTTCCCTTCATCCATGTTCATCACCAACAACAACCTTGAACCTTCTAATCATCATCACCTACACCAACACTACCCTTATCATCACCCTACTCCAAAACCCATATTTTCTTCTCTTCTAAGTGGCATGATGATCCCTAGCACCACCACCAATAACCCCTTGTTTGATCACAACAACAATAATAATAATAATTCCCACCAGATGATGGGATTTCTTGAACCTCAAGCTTTCATCACCGCTCCATCAAATGCAGATGCTACCCTCTTGGGGGGTTTAGGCGGATTTCCAACAAGTTTGAACAACTCATCATCATCAGACCCCAATAATAATAACATAGCAGCAACGGTGATGATCCCACAAGAACAAGAAGACAAACCGCCCAATAATAAGCTAGCCCTCTTTGAGAGTTTTCCCAATGACATTGAGAATAATACTACTAGTGGTGCAGTTGCTGCAAATTCATCGTCATGGATGTTGAACAACAAGTACTCCAACATACTCATGAGACCTCTTGAATCTTTGTCTCCATCATCAGGTGCACAACCAACACTCTTTCAGAAGAGAGCAGCACAACACAAGAAAATCATCAACATCACAGAAGAAGAAAGAGGAAAGAGAAAGATTGATGATGAGGAACAAGAAGAAGTAGAGAAAAGGAAGCTGGACATGGAAGATATTGGAGATGGAAGCTTGTTGAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATAGCATTGACAACAACAACAACAACATGATGAAGATGGAATCGGAGAGTAGTAATAAAAACAAGAATATTATTATTGGTGAAAACAGCAACAAAAACAGTAACAATAATCACAATTTGCAGAAAGGGAATAATAACAAGAAGAAGACAGGGATGCCTGCCAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAGCTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTTCATAATGAATTGCAATCAATGCCTTCTCACCCTCCTCCTGCACCTGCTTCAAGCTTGCATCATCCTTTGACACCAACTAATACTACTGCTACTCTACCACCACCACCAGCACCTGCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCTCTTCCTCATTCTCAACTCATCATCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGAGTAAATATCCATATGTTTTGCGATCAGAAGCCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGCTTGGATATCCAGCAGGCAGTTATCAGTTTCTTCAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCTGGCTTCCATAACATCATGTAG	1758	0.4192	MSSTNSTCLMEERELSDANNTYELIPIPIPHHLNEDWYIPDNNTPTTIQNQQPPGSDSDTRDINFFHQDNNTFFHPSSFPSSMFITNNNLEPSNHHHLHQHYPYHHPTPKPIFSSLLSGMMIPSTTTNNPLFDHNNNNNNNSHQMMGFLEPQAFITAPSNADATLLGGLGGFPTSLNNSSSSDPNNNNIAATVMIPQEQEDKPPNNKLALFESFPNDIENNTTSGAVAANSSSWMLNNKYSNILMRPLESLSPSSGAQPTLFQKRAAQHKKIINITEEERGKRKIDDEEQEEVEKRKLDMEDIGDGSLLNSYDDYSDHDMVEDSIDNNNNNMMKMESESSNKNKNIIIGENSNKNSNNNHNLQKGNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPSHPPPAPASSLHHPLTPTNTTATLPPPPAPASLPSRMMMKETASCPSSSFSTHHPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNIM	585

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc272690g00004	585	MobiDBLite	consensus disorder prediction	432	471	-	-
Stsc272690g00004	585	SMART	finulus	379	428	IPR011598	GO:0046983
Stsc272690g00004	585	Pfam	Helix-loop-helix DNA-binding domain	380	422	IPR011598	GO:0046983
Stsc272690g00004	585	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	373	422	IPR011598	GO:0046983
Stsc272690g00004	585	Gene3D	-	363	438	IPR036638	GO:0046983
Stsc272690g00004	585	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	376	445	IPR036638	GO:0046983
Stsc272690g00004	585	CDD	bHLH_AtAMS_like	376	434	-	-
Stsc272690g00004	585	MobiDBLite	consensus disorder prediction	351	373	-	-
Stsc272690g00004	585	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	221	574	-	-
Stsc272690g00004	585	FunFam	BHLH transcription factor	369	437	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272690g00004	Stsc-Chr272690	20728	23301	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272690g00004	244	555	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G26744	50.473	8.05e-77	249

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Stsc272690g00004		HLH	1.8e-09	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272690g00004	-		-	ahf:112732910	753.821

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