Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272690g00004 ATGTCTAGCACAAACAGCACTTGTCTCATGGAAGAAAGAGAGCTCTCTGATGCCAACAACACCTATGAACTTATCCCTATTCCTATTCCTCATCACCTCAATGAAGATTGGTATATACCTGACAACAACACTCCTACTACTATCCAAAATCAACAACCTCCGGGTTCAGACTCAGATACAAGGGACATCAACTTCTTTCATCAAGATAACAACACTTTCTTCCATCCATCTTCTTTCCCTTCATCCATGTTCATCACCAACAACAACCTTGAACCTTCTAATCATCATCACCTACACCAACACTACCCTTATCATCACCCTACTCCAAAACCCATATTTTCTTCTCTTCTAAGTGGCATGATGATCCCTAGCACCACCACCAATAACCCCTTGTTTGATCACAACAACAATAATAATAATAATTCCCACCAGATGATGGGATTTCTTGAACCTCAAGCTTTCATCACCGCTCCATCAAATGCAGATGCTACCCTCTTGGGGGGTTTAGGCGGATTTCCAACAAGTTTGAACAACTCATCATCATCAGACCCCAATAATAATAACATAGCAGCAACGGTGATGATCCCACAAGAACAAGAAGACAAACCGCCCAATAATAAGCTAGCCCTCTTTGAGAGTTTTCCCAATGACATTGAGAATAATACTACTAGTGGTGCAGTTGCTGCAAATTCATCGTCATGGATGTTGAACAACAAGTACTCCAACATACTCATGAGACCTCTTGAATCTTTGTCTCCATCATCAGGTGCACAACCAACACTCTTTCAGAAGAGAGCAGCACAACACAAGAAAATCATCAACATCACAGAAGAAGAAAGAGGAAAGAGAAAGATTGATGATGAGGAACAAGAAGAAGTAGAGAAAAGGAAGCTGGACATGGAAGATATTGGAGATGGAAGCTTGTTGAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATAGCATTGACAACAACAACAACAACATGATGAAGATGGAATCGGAGAGTAGTAATAAAAACAAGAATATTATTATTGGTGAAAACAGCAACAAAAACAGTAACAATAATCACAATTTGCAGAAAGGGAATAATAACAAGAAGAAGACAGGGATGCCTGCCAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAGCTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTTCATAATGAATTGCAATCAATGCCTTCTCACCCTCCTCCTGCACCTGCTTCAAGCTTGCATCATCCTTTGACACCAACTAATACTACTGCTACTCTACCACCACCACCAGCACCTGCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCTCTTCCTCATTCTCAACTCATCATCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGAGTAAATATCCATATGTTTTGCGATCAGAAGCCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGCTTGGATATCCAGCAGGCAGTTATCAGTTTCTTCAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCTGGCTTCCATAACATCATGTAG 1758 0.4192 MSSTNSTCLMEERELSDANNTYELIPIPIPHHLNEDWYIPDNNTPTTIQNQQPPGSDSDTRDINFFHQDNNTFFHPSSFPSSMFITNNNLEPSNHHHLHQHYPYHHPTPKPIFSSLLSGMMIPSTTTNNPLFDHNNNNNNNSHQMMGFLEPQAFITAPSNADATLLGGLGGFPTSLNNSSSSDPNNNNIAATVMIPQEQEDKPPNNKLALFESFPNDIENNTTSGAVAANSSSWMLNNKYSNILMRPLESLSPSSGAQPTLFQKRAAQHKKIINITEEERGKRKIDDEEQEEVEKRKLDMEDIGDGSLLNSYDDYSDHDMVEDSIDNNNNNMMKMESESSNKNKNIIIGENSNKNSNNNHNLQKGNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPSHPPPAPASSLHHPLTPTNTTATLPPPPAPASLPSRMMMKETASCPSSSFSTHHPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNIM 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272690g00004 585 MobiDBLite consensus disorder prediction 432 471 - -
Stsc272690g00004 585 SMART finulus 379 428 IPR011598 GO:0046983
Stsc272690g00004 585 Pfam Helix-loop-helix DNA-binding domain 380 422 IPR011598 GO:0046983
Stsc272690g00004 585 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983
Stsc272690g00004 585 Gene3D - 363 438 IPR036638 GO:0046983
Stsc272690g00004 585 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 445 IPR036638 GO:0046983
Stsc272690g00004 585 CDD bHLH_AtAMS_like 376 434 - -
Stsc272690g00004 585 MobiDBLite consensus disorder prediction 351 373 - -
Stsc272690g00004 585 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 221 574 - -
Stsc272690g00004 585 FunFam BHLH transcription factor 369 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272690g00004 Stsc-Chr272690 20728 23301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272690g00004 244 555 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.473 8.05e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272690g00004 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272690g00004 - - ahf:112732910 753.821